Related papers: Scikit-dimension: a Python package for intrinsic d…
Complex systems are increasingly being viewed as distributed information processing systems, particularly in the domains of computational neuroscience, bioinformatics and Artificial Life. This trend has resulted in a strong uptake in the…
KnowIt (Knowledge discovery in time series data) is a flexible framework for building deep time series models and interpreting them. It is implemented as a Python toolkit, with source code and documentation available from…
This paper introduces the multi-freq-ldpy Python package for multiple frequency estimation under Local Differential Privacy (LDP) guarantees. LDP is a gold standard for achieving local privacy with several real-world implementations by big…
Recent advances in computational methods for designing biological sequences have sparked the development of metrics to evaluate these methods performance in terms of the fidelity of the designed sequences to a target distribution and their…
This paper shows that further evaluation metrics during model training are needed to decide about its applicability in inference. As an example, a LayoutLM-based model is trained for token classification in documents. The documents are…
Exploiting the recent advancements in artificial intelligence, showcased by ChatGPT and DALL-E, in real-world applications necessitates vast, domain-specific, and publicly accessible datasets. Unfortunately, the scarcity of such datasets…
Computational materials science produces large quantities of data, both in terms of high-throughput calculations and individual studies. Extracting knowledge from this large and heterogeneous pool of data is challenging due to the wide…
Here we present our Python toolbox "MR. Estimator" to reliably estimate the intrinsic timescale from electrophysiologal recordings of heavily subsampled systems. Originally intended for the analysis of time series from neuronal spiking…
I present a Python package developed for fitting Voigt profiles to absorption lines. The software fits multiple components for various atomic lines simultaneously allowing parameters to be tied and fixed. Moreover, the code is able to…
This paper introduces the Intrinsic Dimension Estimating Autoencoder (IDEA), which identifies the underlying intrinsic dimension of a wide range of datasets whose samples lie on either linear or nonlinear manifolds. Beyond estimating the…
Scikit-learn is an increasingly popular machine learning li- brary. Written in Python, it is designed to be simple and efficient, accessible to non-experts, and reusable in various contexts. In this paper, we present and discuss our design…
Estimating albedo (a.k.a., intrinsic image decomposition) from single RGB images captured in real-world environments (e.g., the MVImgNet dataset) presents a significant challenge due to the absence of paired images and their ground truth…
SocialED is a comprehensive, open-source Python library designed to support social event detection (SED) tasks, integrating 19 detection algorithms and 14 diverse datasets. It provides a unified API with detailed documentation, offering…
Machine learning has enabled differential cross section measurements that are not discretized. Going beyond the traditional histogram-based paradigm, these unbinned unfolding methods are rapidly being integrated into experimental workflows.…
The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory. IDTxl provides functionality to…
Intrinsic dimension and differential entropy estimators are studied in this paper, including their systematic bias. A pragmatic approach for joint estimation and bias correction of these two fundamental measures is proposed. Shared steps on…
Methodology bugs in scientific Python code produce plausible but incorrect results that traditional linters and static analysis tools cannot detect. Several research groups have built ML-specific linters, demonstrating that detection is…
Time-to-event (survival) analysis models the time until a pre-specified event occurs. When time is measured in discrete units or rounded into intervals, standard continuous-time models can yield biased estimators. In addition, the event of…
Depth estimation and 3D reconstruction have been extensively studied as core topics in computer vision. Starting from rigid objects with relatively simple geometric shapes, such as vehicles, the research has expanded to address general…
High-dimensional datasets often exhibit low-dimensional geometric structures, as suggested by the manifold hypothesis, which implies that data lie on a smooth manifold embedded in a higher-dimensional ambient space. While this insight…