Related papers: Steady state distributions in generalized exclusio…
It is known that the Markov matrix of the asymmetric simple exclusion process (ASEP) is invariant under the Uq(sl2) algebra. This is the result of the fact that the Markov matrix of the ASEP coincides with the generator of the…
We introduce the totally asymmetric exclusion process with Langmuir kinetics (TASEP-LK) on a network as a microscopic model for active motor protein transport on the cytoskeleton, immersed in the diffusive cytoplasm. We discuss how the…
In a recent study [C Arita, Phys. Rev. E 80, 051119 (2009)], an extension of the M/M/1 queueing process with the excluded-volume effect as in the totally asymmetric simple exclusion process (TASEP) was introduced. In this paper, we consider…
The Symmetric Exclusion Process (SEP), in which particles hop symmetrically on a discrete line with hard-core constraints, is a paradigmatic model of subdiffusion in confined systems. This anomalous behavior is a direct consequence of…
The TASEP (totally asymmetric simple exclusion process) is a basic model for an one-dimensional interacting particle system with non-reversible dynamics. Despite the simplicity of the model it shows a very rich and interesting behaviour. In…
The process of protein synthesis in biological systems resembles a one dimensional driven lattice gas in which the particles have spatial extent, covering more than one lattice site. We expand the well studied Totally Asymmetric Exclusion…
We consider the dynamics of cargo driven by a collection of interacting molecular motors in the context of an asymmetric simple exclusion processes (ASEP). The model is formulated to account for i) excluded volume interactions, ii) the…
A system consisting of two parallel coupled channels where particles in one of them follow the rules of totally asymmetric exclusion processes (TASEP) and in another one move as in symmetric simple exclusion processes (SSEP) is investigated…
We study the totally asymmetric simple exclusion process (TASEP) on $\mathbb{Z}$ with a general initial condition and a deterministically moving wall in front of the particles. Using colour-position symmetry, we express the one-point…
Boolean Networks (BNs) are established models to qualitatively describe biological systems. The analysis of BNs might be infeasible for medium to large BNs due to the state-space explosion problem. We propose a novel reduction technique…
The Type D asymmetric simple exclusion process (ASEP) is a particle system involving two classes of particles that can be viewed from both a probabilistic and an algebraic perspective (arXiv:2011.13473). From a probabilistic perspective, we…
mRNA translation is a crucial process that leads to protein synthesis in living cells. Therefore, it is a process that needs to work optimally for a cell to stay healthy and alive. With advancements in microscopy and novel experimental…
The asymmetric simple inclusion process (ASIP) --- a lattice-gas model for unidirectional transport with irreversible aggregation --- has been proposed as an inclusion counterpart of the asymmetric simple exclusion process and as a batch…
The adaptive smoothing method (ASM) is a standard data-driven technique used in traffic state estimation. The ASM has free parameters which, in practice, are chosen to be some generally acceptable values based on intuition. However, we note…
Answer Set Programming (ASP) is a declarative problem solving paradigm that can be used to encode a combinatorial problem as a logic program whose stable models correspond to the solutions of the considered problem. ASP has been widely…
We propose and study a conceptual one-dimensional model to explore how the combined interplay between fixed resources and particle exchanges between different parts of an extended system can affect the stationary densities in a current…
Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…
Unlike equilibrium statistical mechanics, with its well-established foundations, a similar widely-accepted framework for non-equilibrium statistical mechanics (NESM) remains elusive. Here, we review some of the many recent activities on…
We propose an extension of the totally asymmetric simple exclusion process (TASEP) in which particles hopping along a lattice can be blocked by obstacles that dynamically attach/detach from lattice sites. The model can be thought as TASEP…
Using the generalized normally ordered form of words in a locally-free group of $n$ generators, we show that in the limit $n\to\infty$, the partition function of weighted directed lattice animals on a semi-infinite strip coincides with the…