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Automatic extraction of clinical concepts is an essential step for turning the unstructured data within a clinical note into structured and actionable information. In this work, we propose a clinical concept extraction model for automatic…

Computation and Language · Computer Science 2018-11-28 Henghui Zhu , Ioannis Ch. Paschalidis , Amir Tahmasebi

Extracting phenotypes from clinical text has been shown to be useful for a variety of clinical use cases such as identifying patients with rare diseases. However, reasoning with numerical values remains challenging for phenotyping in…

Computation and Language · Computer Science 2022-04-22 Ashwani Tanwar , Jingqing Zhang , Julia Ive , Vibhor Gupta , Yike Guo

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems.…

Computation and Language · Computer Science 2020-09-18 Andriy Mulyar , Elliot Schumacher , Masoud Rouhizadeh , Mark Dredze

We address the task of unsupervised Semantic Textual Similarity (STS) by ensembling diverse pre-trained sentence encoders into sentence meta-embeddings. We apply, extend and evaluate different meta-embedding methods from the word embedding…

Computation and Language · Computer Science 2020-06-25 Nina Poerner , Ulli Waltinger , Hinrich Schütze

Being able to automatically discover synonymous entities in an open-world setting benefits various tasks such as entity disambiguation or knowledge graph canonicalization. Existing works either only utilize entity features, or rely on…

Computation and Language · Computer Science 2020-05-12 Chenwei Zhang , Yaliang Li , Nan Du , Wei Fan , Philip S. Yu

Contextualized embeddings use unsupervised language model pretraining to compute word representations depending on their context. This is intuitively useful for generalization, especially in Named-Entity Recognition where it is crucial to…

Computation and Language · Computer Science 2020-01-23 Bruno Taillé , Vincent Guigue , Patrick Gallinari

Sentence embedding tasks are important in natural language processing (NLP), but improving their performance while keeping them reliable is still hard. This paper presents a framework that combines pseudo-label generation and model ensemble…

Computation and Language · Computer Science 2025-01-28 Ziwei Liu , Qi Zhang , Lifu Gao

The knowledge that humans hold about a problem often extends far beyond a set of training data and output labels. While the success of deep learning mostly relies on supervised training, important properties cannot be inferred efficiently…

Computer Vision and Pattern Recognition · Computer Science 2019-11-19 Damien Teney , Ehsan Abbasnejad , Anton van den Hengel

Self-attentive neural syntactic parsers using contextualized word embeddings (e.g. ELMo or BERT) currently produce state-of-the-art results in joint parsing and disfluency detection in speech transcripts. Since the contextualized word…

Computation and Language · Computer Science 2020-04-30 Paria Jamshid Lou , Mark Johnson

Our work addresses the problem of unsupervised Aspect Category Detection using a small set of seed words. Recent works have focused on learning embedding spaces for seed words and sentences to establish similarities between sentences and…

Computation and Language · Computer Science 2023-11-17 Thi-Nhung Nguyen , Hoang Ngo , Kiem-Hieu Nguyen , Tuan-Dung Cao

The lack of contextual information in text data can make the annotation process of text-based emotion classification datasets challenging. As a result, such datasets often contain labels that fail to consider all the relevant emotions in…

Computation and Language · Computer Science 2023-11-08 Daniel Yang , Aditya Kommineni , Mohammad Alshehri , Nilamadhab Mohanty , Vedant Modi , Jonathan Gratch , Shrikanth Narayanan

Cross-modal retrieval methods have been significantly improved in last years with the use of deep neural networks and large-scale annotated datasets such as ImageNet and Places. However, collecting and annotating such datasets requires a…

Computer Vision and Pattern Recognition · Computer Science 2019-02-04 Yash Patel , Lluis Gomez , Marçal Rusiñol , Dimosthenis Karatzas , C. V. Jawahar

We hypothesize that explicit integration of contextual information into an Multi-task Learning framework would emphasize the significance of context for boosting performance in jointly learning Named Entity Recognition (NER) and Relation…

Computation and Language · Computer Science 2021-02-23 Paul Barry , Sam Henry , Meliha Yetisgen , Bridget McInnes , Ozlem Uzuner

Recent advances on the Vector Space Model have significantly improved some NLP applications such as neural machine translation and natural language generation. Although word co-occurrences in context have been widely used in…

Computation and Language · Computer Science 2022-10-03 Dongqiang Yang , Pikun Wang , Xiaodong Sun , Ning Li

This study investigates the use of unsupervised word embeddings and sequence features for sample representation in an active learning framework built to extract clinical concepts from clinical free text. The objective is to further reduce…

Computation and Language · Computer Science 2016-11-16 Mahnoosh Kholghi , Lance De Vine , Laurianne Sitbon , Guido Zuccon , Anthony Nguyen

Practical sequence classification tasks in natural language processing often suffer from low training data availability for target classes. Recent works towards mitigating this problem have focused on transfer learning using embeddings…

Computation and Language · Computer Science 2021-01-29 Manoj Kumar , Varun Kumar , Hadrien Glaude , Cyprien delichy , Aman Alok , Rahul Gupta

Deep neural network models can learn clinically relevant features from millions of histopathology images. However generating high-quality annotations to train such models for each hospital, each cancer type, and each diagnostic task is…

Acquisition of multilingual training data continues to be a challenge in word sense disambiguation (WSD). To address this problem, unsupervised approaches have been proposed to automatically generate sense annotations for training…

Computation and Language · Computer Science 2021-09-21 Bradley Hauer , Grzegorz Kondrak , Yixing Luan , Arnob Mallik , Lili Mou

Novel contexts may often arise in complex querying scenarios such as in evidence-based medicine (EBM) involving biomedical literature, that may not explicitly refer to entities or canonical concept forms occurring in any fact- or rule-based…

Computation and Language · Computer Science 2019-11-12 Manirupa Das , Juanxi Li , Eric Fosler-Lussier , Simon Lin , Soheil Moosavinasab , Steve Rust , Yungui Huang , Rajiv Ramnath

Recent studies have demonstrated the usefulness of contextualized word embeddings in unsupervised semantic frame induction. However, they have also revealed that generic contextualized embeddings are not always consistent with human…

Computation and Language · Computer Science 2023-04-28 Kosuke Yamada , Ryohei Sasano , Koichi Takeda
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