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Several theoretical frameworks have been proposed to explain observed biodiversity patterns, ranging from the classical niche-based theories, mainly employing a continuous formalism, to neutral theories, based on statistical mechanics of…

Quantitative Methods · Quantitative Biology 2019-11-01 Xue Feng , Sara Bonetti , Amilcare Porporato

Joint Species Distribution Models are essential for understanding how ecological drivers shape species communities. However, most existing approaches are limited by rigid parametric distributions for count data and the inability to model…

Methodology · Statistics 2025-12-05 Lukas Graz , Luisa Barbanti , Roland Brandl , Torsten Hothorn

Accelerating global biodiversity loss has highlighted the role of complex relationships and shared patterns among species in determining their responses to environmental changes. The structure of an ecological community, represented by…

Applications · Statistics 2025-09-03 Braden Scherting , Otso Ovaskainen , David B. Dunson

Explaining the emergence of self-organized biodiversity and species abundance distribution patterns remians a fundamental challenge in ecology. While classical frameworks, such as neutral theory and models based on pairwise species…

Populations and Evolution · Quantitative Biology 2025-10-29 Ju Kang , Yiyuan Niu , Yuanzhi Li , Chengjin Chu

Collective phenomena, whereby agent-agent interactions determine spatial patterns, are ubiquitous in the animal kingdom. On the other hand, movement and space use are also greatly influenced by the interactions between animals and their…

Quantitative Methods · Quantitative Biology 2016-03-21 Jonathan R. Potts , Karl Mokross , Mark A. Lewis

Understanding historical forest dynamics, specifically changes in forest biomass and carbon stocks, has become critical for assessing current forest climate benefits and projecting future benefits under various policy, regulatory, and…

Applications · Statistics 2023-08-29 Lucas K. Johnson , Michael J. Mahoney , Madeleine L. Desrochers , Colin M. Beier

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-18 Chengyi Tu , Samir Suweis , Jacopo Grillib , Marco Formentin , Amos Maritan

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-21 Chengyi Tu , Samir Suweis , Jacopo Grilli , Marco Formentin , Amos Maritan

The rapid expansion of urban areas challenges biodiversity conservation, requiring innovative ecosystem management. This study explores the role of Artificial Intelligence (AI) in urban biodiversity conservation, its applications, and a…

Computers and Society · Computer Science 2025-01-28 Yasmin Rahmati

Species distribution models (SDMs) are widely used to predict species' geographic distributions, serving as critical tools for ecological research and conservation planning. Typically, SDMs relate species occurrences to environmental…

Machine Learning · Computer Science 2025-08-12 Hager Radi Abdelwahed , Mélisande Teng , Robin Zbinden , Laura Pollock , Hugo Larochelle , Devis Tuia , David Rolnick

There is no much doubt that biotic interactions shape community assembly and ultimately the spatial co-variations between species. There is a hope that the signal of these biotic interactions can be observed and retrieved by investigating…

Machine Learning · Statistics 2025-07-15 Sara Si-Moussi , Esther Galbrun , Mickael Hedde , Giovanni Poggiato , Matthias Rohr , Wilfried Thuiller

Occupancy models are frequently used by ecologists to quantify spatial variation in species distributions while accounting for observational biases in the collection of detection-nondetection data. However, the common assumption that a…

Occupancy modeling is a common approach to assess spatial and temporal species distribution patterns, while explicitly accounting for measurement errors common in detection-nondetection data. Numerous extensions of the basic single species…

Applications · Statistics 2022-05-04 Jeffrey W. Doser , Andrew O. Finley , Marc Kéry , Elise F. Zipkin

This paper focuses on a core task in computational sustainability and statistical ecology: species distribution modeling (SDM). In SDM, the occurrence pattern of a species on a landscape is predicted by environmental features based on…

Machine Learning · Computer Science 2021-02-19 Eugene Seo , Rebecca A. Hutchinson , Xiao Fu , Chelsea Li , Tyler A. Hallman , John Kilbride , W. Douglas Robinson

Evolutionary and ecosystem dynamics are often treated as different processes --operating at separate timescales-- even if evidence reveals that rapid evolutionary changes can feed back into ecological interactions. A recent long-term field…

Populations and Evolution · Quantitative Biology 2018-10-04 Paula Villa Martín , Jorge Hidalgo , Rafael Rubio de Casas , Miguel A. Muñoz

Large-scale, volunteer-collected datasets of community-identified natural world imagery like iNaturalist have enabled marked performance gains for fine-grained visual classification of species using machine learning methods. However, such…

Computer Vision and Pattern Recognition · Computer Science 2025-05-05 Elena Sierra , Lauren E. Gillespie , Salim Soltani , Moises Exposito-Alonso , Teja Kattenborn

Species distribution models (SDMs) are increasingly applied across macroscales. Such models typically assume that a single set of regression coefficients can adequately describe species-environment relationships and/or population trends.…

Understanding species-habitat associations is fundamental to ecological sciences and for species conservation. Consequently, various statistical approaches have been designed to infer species-habitat associations. Due to their conceptual…

Camera traps have become a core tool in ecological research, enabling large-scale, noninvasive monitoring of wildlife populations and behavior. By automatically recording animals as they pass within view, these devices generate massive…

Applications · Statistics 2026-05-14 Adira Cohen , Erin M. Schliep , Roland Kays , Mohammad Alyetama , Matthew Snider

Accurate predictions of the populations and spatial distributions of wild animal species is critical from a species management and conservation perspective. Culling is a measure taken for various reasons, including when overpopulation of a…