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A primary challenge in metagenomics is reconstructing individual microbial genomes from the mixture of short fragments created by sequencing. Recent work leverages the sparsity of the assembly graph to find $r$-dominating sets which enable…

Data Structures and Algorithms · Computer Science 2023-01-24 Yosuke Mizutani , Annie Staker , Blair D. Sullivan

In this paper we consider the fundamental problem of approximating the diameter $D$ of directed or undirected graphs. In a seminal paper, Aingworth, Chekuri, Indyk and Motwani [SIAM J. Comput. 1999] presented an algorithm that computes in…

Data Structures and Algorithms · Computer Science 2012-07-17 Liam Roditty , Virginia Vassilevska Williams

In algorithmic graph theory, a classic open question is to determine the complexity of the Maximum Independent Set problem on $P_t$-free graphs, that is, on graphs not containing any induced path on $t$ vertices. So far, polynomial-time…

Data Structures and Algorithms · Computer Science 2018-04-12 Gábor Bacsó , Daniel Lokshtanov , Dániel Marx , Marcin Pilipczuk , Zsolt Tuza , Erik Jan van Leeuwen

The Restricted Shortest Path (RSP) problem, also known as the Delay-Constrained Least-Cost (DCLC) problem, is an NP-hard bicriteria optimization problem on graphs with $n$ vertices and $m$ edges. In a graph where each edge is assigned a…

Data Structures and Algorithms · Computer Science 2019-11-05 David Holzmüller

We show that a simple local search gives a PTAS for the Feedback Vertex Set (FVS) problem in minor-free graphs. An efficient PTAS in minor-free graphs was known for this problem by Fomin, Lokshtanov, Raman and Sauraubh. However, their…

Data Structures and Algorithms · Computer Science 2019-06-04 Hung Le , Baigong Zheng

A dominating set of a graph $G=(V,E)$ is a subset of vertices $S\subseteq V$ such that every vertex $v\in V\setminus S$ has at least one neighbor in set $S$. The corresponding optimization problem is known to be NP-hard. The best known…

Discrete Mathematics · Computer Science 2024-12-23 Ernesto Parra Inza , José María Sigarreta Almira , Nodari Vakhania

Pushdown systems (PDSs) are a natural model for sequential programs, but they can fail to accurately represent the way an assembly stack actually operates. Indeed, one may want to access the part of the memory that is below the current…

Formal Languages and Automata Theory · Computer Science 2018-11-08 Adrien Pommellet , Marcio Diaz , Tayssir Touili

In order to meet the demands of data-hungry applications, data storage devices are required to be increasingly denser. Various sources of error appear with this increase in density. Multi-dimensional (MD) graph-based codes are capable of…

Information Theory · Computer Science 2020-12-09 Ahmed Hareedy , Rohith Kuditipudi , Robert Calderbank

We consider the problem of finding the minimum-weight subgraph that satisfies given connectivity requirements. Specifically, given a requirement $r \in \{0,1,2,3\}$ for every vertex, we seek the minimum-weight subgraph that contains, for…

Data Structures and Algorithms · Computer Science 2016-11-15 Glencora Borradaile , Baigong Zheng

Solution discovery asks whether a given (infeasible) starting configuration to a problem can be transformed into a feasible solution using a limited number of transformation steps. This paper investigates meta-theorems for solution…

Data Structures and Algorithms · Computer Science 2025-10-21 Nicolas Bousquet , Amer E. Mouawad , Stephanie Maaz , Naomi Nishimura , Sebastian Siebertz

Distributed optimization aims to leverage the local computation and communication capabilities of each agent to achieve a desired global objective. This paper addresses the distributed pose graph optimization (PGO) problem under non-convex…

Systems and Control · Electrical Eng. & Systems 2025-03-11 Zeinab Ebrahimi , Mohammad Deghat

For a fixed integer $r \geq 1$, a distance-$r$ dominating set (D$r$DS) of a graph $G = (V, E)$ is a vertex subset $D \subseteq V$ such that every vertex in $V$ is within distance $r$ from some member of $D$. Given two D$r$DSs $D_s, D_t$ of…

Data Structures and Algorithms · Computer Science 2026-03-10 Niranka Banerjee , Duc A. Hoang

Given a directed graph $G$, a transitive reduction $G^t$ of $G$ (first studied by Aho, Garey, Ullman [SICOMP `72]) is a minimal subgraph of $G$ that preserves the reachability relation between every two vertices in $G$. In this paper, we…

Data Structures and Algorithms · Computer Science 2025-04-28 Gramoz Goranci , Adam Karczmarz , Ali Momeni , Nikos Parotsidis

Let $P$ be a set of points in the plane and let $m$ be an integer. The goal of Max Cover by Unit Disks problem is to place $m$ unit disks whose union covers the maximum number of points from~$P$. We are interested in the dynamic version of…

Computational Geometry · Computer Science 2024-12-19 Mark de Berg , Arpan Sadhukhan

The study of domination in graphs has led to a variety of domination problems studied in the literature. Most of these follow the following general framework: Given a graph $G$ and an integer $k$, decide if there is a set $S$ of $k$…

Data Structures and Algorithms · Computer Science 2024-09-13 Marvin Künnemann , Mirza Redzic

We consider the ``minimum degree spanning tree'' problem. As input, we receive an undirected, connected graph $G=(V, E)$ with $n$ nodes and $m$ edges, and our task is to find a spanning tree $T$ of $G$ that minimizes $\max_{u \in V}…

Data Structures and Algorithms · Computer Science 2026-03-02 Sayan Bhattacharya , Ermiya Farokhnejad , Haoze Wang

We study spreading processes in temporal graphs, i. e., graphs whose connections change over time. These processes naturally model real-world phenomena such as infectious diseases or information flows. More precisely, we investigate how…

Data Structures and Algorithms · Computer Science 2021-07-21 Hendrik Molter , Malte Renken , Philipp Zschoche

We examine the dynamic network flow problem under the assumption that the flow consists of discrete units. The dynamic network flow problem is commonly addressed in the context of developing evacuation plans, where the flow is typically…

Data Structures and Algorithms · Computer Science 2024-04-26 Bubai Manna , Bodhayan Roy , Vorapong Suppakitpaisarn

For a graph formed by vertices and weighted edges, a generalized minimum dominating set (MDS) is a vertex set of smallest cardinality such that the summed weight of edges from each outside vertex to vertices in this set is equal to or…

Information Retrieval · Computer Science 2016-05-04 Yi-Zhi Xu , Hai-Jun Zhou

We present algorithms and experiments for the visualization of directed graphs that focus on displaying their reachability information. Our algorithms are based on the concepts of the path and channel decomposition as proposed in the…

Data Structures and Algorithms · Computer Science 2019-07-29 Panagiotis Lionakis , Giacomo Ortali , Ioannis G. Tollis
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