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We investigate the capacity of noisy frequency-based channels, motivated by DNA data storage in the short-molecule regime, where information is encoded in the frequency of items types rather than their order. The channel output is a…

Information Theory · Computer Science 2026-01-16 Yuval Gerzon , Ilan Shomorony , Nir Weinberger

The dynamics of noise-resilient Boolean networks with majority functions and diverse topologies is investigated. A wide class of possible topological configurations is parametrized as a stochastic blockmodel. For this class of networks, the…

Disordered Systems and Neural Networks · Physics 2012-01-11 Tiago P. Peixoto

This note is concerned with weakly interacting stochastic particle systems with possibly singular pairwise interactions. In this setting, we observe a connection between entropic propagation of chaos and exponential concentration bounds for…

Probability · Mathematics 2024-06-06 Joe Jackson , Antonios Zitridis

The criticality hypothesis posits that biological neural networks operate near a phase transition, yet within standard Gaussian mean-field theories this regime appears fragile and requires fine tuning. Here we show that heavy-tailed…

Biological Physics · Physics 2026-03-20 Ryota Kojima

Providing non-trivial certificates of safety for non-linear stochastic systems is an important open problem that limits the wider adoption of autonomous systems in safety-critical applications. One promising solution to address this problem…

Systems and Control · Electrical Eng. & Systems 2022-06-06 Frederik Baymler Mathiesen , Simeon Calvert , Luca Laurenti

Biological systems are characterized by the ubiquitous roles of weak, that is, non-covalent molecular interactions, small, often very small, numbers of specific molecules per cell, and Brownian motion. These combine to produce stochastic…

Cell Behavior · Quantitative Biology 2023-04-27 Michael W. Klymkowsky

In this paper we study the diffusely observed occurrence of Fractality and Self-organized Criticality in mechanical systems. We analytically show, based on a prototypical compressed tensegrity structure, that these phenomena can be viewed…

Soft Condensed Matter · Physics 2017-09-13 D. De Tommasi , F. Maddalena , G. Puglisi , F. Trentadue

Stochasticity is both exploited and controlled by cells. Although the intrinsic stochasticity inherent in biochemistry is relatively well understood, cellular variation, or 'noise', is predominantly generated by interactions of the system…

Molecular Networks · Quantitative Biology 2008-09-18 Vahid Shahrezaei , Julien F Ollivier , Peter S Swain

We analyse a collection of empirical networks in a wide spectrum of disciplines and show that strong non-normality is ubiquitous in network science. Dynamical processes evolving on non-normal networks exhibit a peculiar behaviour, as…

Adaptation and Self-Organizing Systems · Physics 2018-11-09 Malbor Asllani , Renaud Lambiotte , Timoteo Carletti

The continuous min flow-max cut principle is used to reformulate the 'complexity=volume' conjecture using Lorentzian flows -- divergenceless norm-bounded timelike vector fields whose minimum flux through a boundary subregion is equal to the…

High Energy Physics - Theory · Physics 2022-01-04 Juan F. Pedraza , Andrea Russo , Andrew Svesko , Zachary Weller-Davies

The theory of Balanced Neural Networks is a very popular explanation for the high degree of variability and stochasticity in the brain's activity. Roughly speaking, it entails that typical neurons receive many excitatory and inhibitory…

Probability · Mathematics 2025-05-27 James MacLaurin , Pedro Vilanova

We investigate sensitivity to cumulative perturbations for a few dynamical system classes of practical interest. A system is said to have bounded sensitivity to cumulative perturbations (bounded sensitivity, for short) if an additive…

Systems and Control · Computer Science 2020-05-25 Arsalan Sharifnassab , S. Jamaloddin Golestani

The observation of critical-like behavior in cortical networks represents a major step forward in elucidating how the brain manages information. Understanding the origin and functionality of critical-like dynamics, as well as their…

Neurons and Cognition · Quantitative Biology 2015-06-22 Paula Villa Martín , Paolo Moretti , Miguel A. Muñoz

The transport of molecules through biological and synthetic nanopores is governed by multiple stochastic processes that lead to noisy, fluctuating currents. Disentangling the characteristics of different noise-generating mechanisms is…

Soft Condensed Matter · Physics 2024-10-03 Stuart F. Knowles , Eleanor K. R. Mackay , Alice L. Thorneywork

We study the breakup of confined fluid threads at low flow rates to understand instability mechanisms. To determine the critical conditions between the earlier quasi-stable necking stage and the later unstable collapse stage, simulations…

Fluid Dynamics · Physics 2019-07-10 Xiaodong Chen , Chundong Xue , Gongqing Hu

This work considers a binomial noise channel. The paper can be roughly divided into two parts. The first part is concerned with the properties of the capacity-achieving distribution. In particular, for the binomial channel, it is not known…

Information Theory · Computer Science 2024-01-24 Ian Zieder , Antonino Favano , Luca Barletta , Alex Dytso

Using the concept of discrete noiseless channels, it was shown by Shannon in A Mathematical Theory of Communication that the ultimate performance of an encoder for a constrained system is limited by the combinatorial capacity of the system…

Information Theory · Computer Science 2008-09-09 Georg Böcherer , Valdemar Cardoso da Rocha , Cecilio Pimentel

This work builds upon recent work exploiting the notion of structured singular values to capture nonlinear interactions in the analysis of wall-bounded shear flows. In this context, the structured uncertainty can be interpreted in terms of…

Fluid Dynamics · Physics 2023-03-21 Chang Liu , Yu Shuai , Aishwarya Rath , Dennice F. Gayme

Boolean networks constitute relevant mathematical models to study the behaviours of genetic and signalling networks. These networks define regulatory influences between molecular nodes, each being associated to a Boolean variable and a…

Discrete Mathematics · Computer Science 2025-06-24 José E. R. Cury , Patrícia Tenera Roxo , Vasco Manquinho , Claudine Chaouiya , Pedro T. Monteiro

Networks with only central force interactions are floppy when their average connectivity is below an isostatic threshold. Although such networks are mechanically unstable, they can become rigid when strained. It was recently shown that the…

Biological Physics · Physics 2016-10-19 A. Sharma , A. J. Licup , R. Rens , M. Vahabi , K. A. Jansen , G. H. Koenderink , F. C. MacKintosh
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