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In this paper we propose a model for open Markov chains that can be interpreted as a system of non-interacting particles evolving according to the rules of a Markov chain. The number of particles in the system is not constant, because we…

Probability · Mathematics 2019-01-23 R. Salgado-Garcia

Active systems comprised of self-propelled units show fascinating transitions from Brownian-like dynamics to collective coherent motion. Swirling of swimming bacteria is a spectacular example. This study demonstrates that a nematic liquid…

Active glasses refer to a class of driven non-equilibrium systems that share remarkably similar dynamical behavior as conventional glass-formers in equilibrium. Glass-like dynamical characteristics have been observed in various biological…

Soft Condensed Matter · Physics 2024-12-24 Subhodeep Dey , Smarajit Karmakar

We study a system of self-propelled disks that perform run-and-tumble motion, where particles can adopt more than one internal state. One of those internal states can be transmitted to another particle if the particle carrying this state…

Biological Physics · Physics 2019-12-30 Fernando Peruani , Gustavo Sibona

We show that active transport processes in biological systems can be understood through a local equilibrium description formulated at the mesoscale, the scale to describe stochastic processes. This new approach uses the method established…

Soft Condensed Matter · Physics 2007-05-23 S. Kjelstrup , J. M. Rubi , D. Bedeaux

Information processing abilities of active matter are studied in the reservoir computing (RC) paradigm to infer the future state of a chaotic signal. We uncover an exceptional regime of agent dynamics that has been overlooked previously. It…

Adaptation and Self-Organizing Systems · Physics 2026-01-26 Mario U. Gaimann , Miriam Klopotek

A variety of nonlinear models of biological systems generate complex chaotic behaviors that contrast with biological homeostasis, the observation that many biological systems prove remarkably robust in the face of changing external or…

Chaotic Dynamics · Physics 2023-07-07 Jonathan Jaquette , Sonal Kedia , Evelyn Sander , Jonathan D. Touboul

Various biological system models have been proposed in systems biology, which are based on the complex biological reactions kinetic of various components. These models are not practical because we lack of kinetic information. In this paper,…

Quantitative Methods · Quantitative Biology 2011-02-19 Weidong Huang , Chundu Wu , Bingjia Xiao , Weidong Xia

Key features of biological activity can often be captured by transitions between a finite number of semi-stable states that correspond to behaviors or decisions. We present here a broad class of dynamical systems that are ideal for modeling…

Dynamical Systems · Mathematics 2022-12-14 Megan Morrison , Lai-Sang Young

We consider systems of agents interacting through topological interactions. These have been shown to play an important part in animal andhuman behavior. Precisely, the system consists of a finite number of particles characterized by their…

Mathematical Physics · Physics 2017-11-22 Adrien Blanchet , Pierre Degond

Most spreading processes require spatial proximity between agents. The stationary state of spreading dynamics in a population of mobile agents thus depends on the interplay between the time and length scales involved in the epidemic process…

Statistical Mechanics · Physics 2024-03-05 Jorge P. Rodríguez , Matteo Paoluzzi , Demian Levis , Michele Starnini

Active matter swarms -- collectives of self-propelled particles that could self-assemble, ferry microscopic cargo, or endow materials with dynamic properties -- remain hard to steer. In crowded systems, tracking or controlling individual…

Soft Condensed Matter · Physics 2025-08-05 Titus Quah , Sho C. Takatori , James B. Rawlings

The notions of taxis and kinesis are introduced and used to describe two types of behavior of an organism in non-uniform conditions: (i) Taxis means the guided movement to more favorable conditions; (ii) Kinesis is the non-directional…

Populations and Evolution · Quantitative Biology 2018-12-06 A. N. Gorban , N. Çabukoǧlu

One common feature of a vehicle, an ant and a kinesin motor is that they all convert chemical energy, derived from fuel or food, into mechanical energy required for their forward movement; such objects have been modelled in recent years as…

Statistical Mechanics · Physics 2009-11-10 Debashish Chowdhury

A Multi-Agent System is a distributed system where the agents or nodes perform complex functions that cannot be written down in analytic form. Multi-Agent Systems are highly connected, and the information they contain is mostly stored in…

Multiagent Systems · Computer Science 2011-12-01 Philippe De Wilde , Gerard Briscoe

Many chemotactic bacteria inhabit environments in which chemicals appear as localized pulses and evolve by processes such as diffusion and mixing. We show that, in such environments, physical limits on the accuracy of temporal gradient…

Biological Physics · Physics 2016-01-19 Andrew M. Hein , Douglas R. Brumley , Francesco Carrara , Roman Stocker , Simon A. Levin

We propose an agent-based model of active flexible rods. Inspired by cytoskeletal flows, we introduce activity by an internal flow that contributes to the dissipative forces. The active force between our agents is central and reciprocal,…

Soft Condensed Matter · Physics 2026-03-06 Mathieu Dedenon , Carles Blanch-Mercader , Karsten Kruse , Jens Elgeti

Representations are internal models of the environment that can provide guidance to a behaving agent, even in the absence of sensory information. It is not clear how representations are developed and whether or not they are necessary or…

Neurons and Cognition · Quantitative Biology 2013-08-07 Lars Marstaller , Arend Hintze , Christoph Adami

A multi-agent model for individuals endowed with strategies and subject to diffusive effects is proposed. The microscopic state of each agent is described by a spatial position and a probability measure, interpreted as a mixed strategy,…

Analysis of PDEs · Mathematics 2026-03-24 Alessandro Baldi , Marco Morandotti

Motile microorganisms, like bacteria and algae, unify abilities like self-propulsion, autonomous navigation, and decision-making on the micron scale. While recent breakthroughs have led to the creation of synthetic microswimmers and…

Soft Condensed Matter · Physics 2026-02-06 Aritra K. Mukhopadhyay , Ran Niu , Linhui Fu , Kai Feng , Christopher Fujta , Qiang Zhao , Jinping Qu , Benno Liebchen