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We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…

Data Structures and Algorithms · Computer Science 2013-08-02 Taku Onodera , Kunihiko Sadakane , Tetsuo Shibuya

Massive data sets have radically changed our understanding of how to design efficient algorithms; the streaming paradigm, whether it in terms of number of passes of an external memory algorithm, or the single pass and limited memory of a…

Graphics · Computer Science 2007-05-23 Suresh Venkatasubramanian

Graphs and networks are used to model interactions in a variety of contexts. There is a growing need to quickly assess the characteristics of a graph in order to understand its underlying structure. Some of the most useful metrics are…

Social and Information Networks · Computer Science 2014-12-02 Tamara G. Kolda , Ali Pinar , Todd Plantenga , C. Seshadhri , Christine Task

Graph neural networks (GNNs) have evolved into one of the most popular deep learning architectures. However, GNNs suffer from over-smoothing node information and, therefore, struggle to solve tasks where global graph properties are…

Machine Learning · Computer Science 2023-08-31 Bernhard Schäfl , Lukas Gruber , Johannes Brandstetter , Sepp Hochreiter

Spectral clustering methodologies, when extended to accommodate signed graphs, have encountered notable limitations in effectively encapsulating inherent grouping relationships. Recent findings underscore a substantial deterioration in the…

Social and Information Networks · Computer Science 2025-01-15 Muhieddine Shebaro , Lucas Rusnak , Martin Burtscher , Jelena Tešić

The vast amounts of data used in social, business or traffic networks, biology and other natural sciences are often managed in graph-based data sets, consisting of a few thousand up to billions and trillions of vertices and edges,…

Databases · Computer Science 2021-10-22 Matthias Hauck , Ismail Oukid , Holger Fröning

We show that for any semi-random transposition shuffle on $n$ cards, the mixing time of any given $k$ cards is at most $n\log k$, provided $k=o((n/\log n)^{1/2})$. In the case of the top-to-random transposition shuffle we show that there is…

Probability · Mathematics 2013-02-12 Richard Pymar

We present the implementation of an algorithm for graph isomorphism testing, based on ideas about number of walks (of sufficiently large length) between vertices. The algorithm is expanded for strongly regular graphs (SRG-s) by testing the…

Combinatorics · Mathematics 2007-05-23 Michal Kaukic

Scene Graph Generation (SGG) serves a comprehensive representation of the images for human understanding as well as visual understanding tasks. Due to the long tail bias problem of the object and predicate labels in the available annotated…

Computer Vision and Pattern Recognition · Computer Science 2022-11-10 Anh Duc Bui , Soyeon Caren Han , Josiah Poon

Large-scale graph processing has drawn great attention in recent years. Most of the modern-day datacenter workloads can be represented in the form of Graph Processing such as MapReduce etc. Consequently, a lot of designs for Domain-Specific…

Hardware Architecture · Computer Science 2022-09-07 Khushal Sethi

It is known that a graph isomorphism testing algorithm is polynomially equivalent to a detecting of a graph non-trivial automorphism algorithm. The polynomiality of the latter algorithm, is obtained by consideration of symmetry properties…

General Mathematics · Mathematics 2007-05-23 Aleksandr Golubchik

Common models for random graphs, such as Erd\H{o}s-R\'{e}nyi and Kronecker graphs, correspond to generating random adjacency matrices where each entry is non-zero based on a large matrix of probabilities. Generating an instance of a random…

Social and Information Networks · Computer Science 2017-09-14 Arjun S. Ramani , Nicole Eikmeier , David F. Gleich

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

Designing distributed and scalable algorithms to improve network connectivity is a central topic in peer-to-peer networks. In this paper we focus on the following well-known problem: given an $n$-node $d$-regular network for $d=\Omega(\log…

Data Structures and Algorithms · Computer Science 2015-10-28 Zeyuan Allen-Zhu , Aditya Bhaskara , Silvio Lattanzi , Vahab Mirrokni , Lorenzo Orecchia

In the paper we discuss how to share the secrets, that are graphs. So, far secret sharing schemes were designed to work with numbers. As the first step, we propose conditions for "graph to number" conversion methods. Hence, the existing…

Cryptography and Security · Computer Science 2007-05-23 Kamil Kulesza , Zbigniew Kotulski

Let $S$ be an independent set of a simple undirected graph $G$. Suppose that each vertex of $S$ has a token placed on it. The tokens are allowed to be moved, one at a time, by sliding along the edges of $G$, so that after each move, the…

Discrete Mathematics · Computer Science 2024-10-10 Mathew C. Francis , Veena Prabhakaran

Finding all maximal $k$-plexes on networks is a fundamental research problem in graph analysis due to many important applications, such as community detection, biological graph analysis, and so on. A $k$-plex is a subgraph in which every…

Data Structures and Algorithms · Computer Science 2022-05-03 Qiangqiang Dai , Rong-Hua Li , Hongchao Qin , Meihao Liao , Guoren Wang

In this paper, a novel image encryption algorithm, which involves a chaotic block image scrambling followed by a two-dimensional (2-D) discrete linear chirp transform, is proposed. The definition of the 2-D discrete linear chirp transform…

Image and Video Processing · Electrical Eng. & Systems 2018-07-10 Osama A. S. Alkishriwo

We introduce I/O-optimal certifying algorithms for bipartite graphs, as well as for the classes of split, threshold, bipartite chain, and trivially perfect graphs. When the input graph is a class member, the certifying algorithm returns a…

Data Structures and Algorithms · Computer Science 2022-10-25 Ulrich Meyer , Hung Tran , Konstantinos Tsakalidis

A graph has the unique path property UPP_n if there is a unique path of length n between any ordered pair of nodes. This paper reiterates Royle and MacKay's technique for constructing orderly algorithms. We wish to use this technique to…

Rings and Algebras · Mathematics 2007-05-23 Tim Boykett
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