Related papers: Absent Subsequences in Words
We find generating functions the number of strings (words) containing a specified number of occurrences of certain types of order-isomorphic classes of substrings called subword patterns. In particular, we find generating functions for the…
We investigate the variance of the length of the longest common subsequences of two independent random words of size $n$, where the letters of one word are i.i.d. uniformly drawn from $\{\alpha_1, \alpha_2, \cdots, \alpha_m\}$, while the…
The deviation of the observed frequency of a word $w$ from its expected frequency in a given sequence $x$ is used to determine whether or not the word is avoided. This concept is particularly useful in DNA linguistic analysis. The value of…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
The fundamental question considered in algorithms on strings is that of indexing, that is, preprocessing a given string for specific queries. By now we have a number of efficient solutions for this problem when the queries ask for an exact…
A researcher is interested in what sample size is needed to get the required significance of the same test, assuming exactly the same situation that was in the study with the non-significant result. We propose a simple solution to the…
We investigate the least number of palindromic factors in an infinite word. We first consider general alphabets, and give answers to this problem for periodic and non-periodic words, closed or not under reversal of factors. We then…
The work takes another look at the number of runs that a string might contain and provides an alternative proof for the bound. We also propose another stronger conjecture that states that, for a fixed order on the alphabet, within every…
A {\em square} is a word of the form $uu$. In this paper we prove that for a given finite word $w$, the number of distinct square factors of $w$ is bounded by $|w|-|\Alphabet(w)|+1$, where $|w|$ denotes the length of $w$ and…
A weighted string, also known as a position weight matrix, is a sequence of probability distributions over some alphabet. We revisit the Weighted Shortest Common Supersequence (WSCS) problem, introduced by Amir et al. [SPIRE 2011], that is,…
Let $\mathcal{A}$ be a sequence of $rk$ terms which is made up of $k$ distinct integers each appearing exactly $r$ times in $\mathcal{A}$. The sum of all terms of a subsequence of $\mathcal{A}$ is called a subsequence sum of $\mathcal{A}$.…
Sequence pattern avoidance is a central topic in combinatorics. A sequence $s$ contains a sequence $u$ if some subsequence of $s$ can be changed into $u$ by a one-to-one renaming of its letters. If $s$ does not contain $u$, then $s$ avoids…
A string is said to be closed if its length is one, or if it has a non-empty factor that occurs both as a prefix and as a suffix of the string, but does not occur elsewhere. The notion of closed words was introduced by [Fici, WORDS 2011].…
A supersequence over a finite set is a sequence that contains as subsequence all permutations of the set. This paper defines an infinite array of methods to create supersequences of decreasing lengths. This yields the shortest known…
Given a finite word u, we define its palindromic length |u|_{pal} to be the least number n such that u=v_1v_2... v_n with each v_i a palindrome. We address the following open question: Does there exist an infinite non ultimately periodic…
Factor analysis is a statistical technique that explains correlations among observed random variables with the help of a smaller number of unobserved factors. In traditional full factor analysis, each observed variable is influenced by…
This paper presents a theory of non-linear integer/real arithmetic and algorithms for reasoning about this theory. The theory can be conceived as an extension of linear integer/real arithmetic with a weakly-axiomatized multiplication…
We revisit two well-known algorithmic problems on strings: computing a shortest unique substring (SUS) and a shortest absent substring (SAS) of a string $S$ of length $n$. Both problems admit folklore $\mathcal{O}(n)$-time solutions using…
We study the IS-algorithm, a well-known linear-time algorithm for computing the suffix array of a word. This algorithm relies on transforming the input word $w$ into another word, called the reduced word of $w$, that will be at least twice…
If $u$ and $v$ are two words, the correlation of $u$ over $v$ is a binary word that encodes all possible overlaps between $u$ and $v$. This concept was introduced by Guibas and Odlyzko as a key element of their method for enumerating the…