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Single particle, cryogenic electron microscopy (cryo-EM) experiments now routinely produce high-resolution data for large proteins and their complexes. Building an atomic model into a cryo-EM density map is challenging, particularly when no…

Biomolecules · Quantitative Biology 2020-09-04 Po-Nan Li , Saulo H. P. de Oliveira , Soichi Wakatsuki , Henry van den Bedem

Incorporating boundaries of the imaging object as a priori information to imaging algorithms can significantly improve the performance of electromagnetic medical imaging systems. To avoid overly complicating the system by using different…

Computer Vision and Pattern Recognition · Computer Science 2022-03-14 A. Al-Saffar , A. Stancombe , A. Zamani , A. Abbosh

This paper studies the problem of recursively estimating the weighted adjacency matrix of a network out of a temporal sequence of binary-valued observations. The observation sequence is generated from nonlinear networked dynamics in which…

Systems and Control · Electrical Eng. & Systems 2019-12-06 Yu Xing , Xingkang He , Haitao Fang , Karl Henrik Johansson

Ensemble weather predictions require statistical post-processing of systematic errors to obtain reliable and accurate probabilistic forecasts. Traditionally, this is accomplished with distributional regression models in which the parameters…

Machine Learning · Statistics 2019-04-01 Stephan Rasp , Sebastian Lerch

While deep neural networks are highly performant and successful in a wide range of real-world problems, estimating their predictive uncertainty remains a challenging task. To address this challenge, we propose and implement a loss function…

Machine Learning · Computer Science 2022-10-14 Tony Tohme , Kevin Vanslette , Kamal Youcef-Toumi

Network embedding, which aims to learn low-dimensional representations of nodes, has been used for various graph related tasks including visualization, link prediction and node classification. Most existing embedding methods rely solely on…

Social and Information Networks · Computer Science 2019-08-22 Palash Goyal , Homa Hosseinmardi , Emilio Ferrara , Aram Galstyan

The neural network method of solving differential equations is used to approximate the electric potential and corresponding electric field in the slit-well microfluidic device. The device's geometry is non-convex, making this a challenging…

Computational Physics · Physics 2020-07-29 Martin Magill , Andrew M. Nagel , Hendrick W. de Haan

This work focuses on model preparation for electrostatic simulations of CAD designs to realize a rapid virtual prototyping concept. We present a boundary element method (BEM) allowing discontinuous fields between surfaces. The corresponding…

Computational Engineering, Finance, and Science · Computer Science 2024-12-13 Benjamin Marussig , Thomas Rüberg , Jürgen Zechner , Lars Kielhorn , Thomas-Peter Fries

Panel-based, kernel-split quadrature is currently one of the most efficient methods available for accurate evaluation of singular and nearly singular layer potentials in two dimensions. However, it can fail completely for the layer…

Numerical Analysis · Mathematics 2021-08-04 Fredrik Fryklund , Ludvig af Klinteberg , Anna-Karin Tornberg

Very deep convolutional neural networks (CNNs) yield state of the art results on a wide variety of visual recognition problems. A number of state of the the art methods for image recognition are based on networks with well over 100 layers…

Computer Vision and Pattern Recognition · Computer Science 2016-07-15 Joel Moniz , Christopher Pal

Traditional algorithms for compressive sensing recovery are computationally expensive and are ineffective at low measurement rates. In this work, we propose a data driven non-iterative algorithm to overcome the shortcomings of earlier…

Computer Vision and Pattern Recognition · Computer Science 2017-08-18 Suhas Lohit , Kuldeep Kulkarni , Ronan Kerviche , Pavan Turaga , Amit Ashok

This paper addresses the need for deep learning models to integrate well-defined constraints into their outputs, driven by their application in surrogate models, learning with limited data and partial information, and scenarios requiring…

Machine Learning · Statistics 2024-07-02 Rahul Rathnakumar , Jiayu Huang , Hao Yan , Yongming Liu

We propose a Bayesian neural network-based continual learning algorithm using Variational Inference, aiming to overcome several drawbacks of existing methods. Specifically, in continual learning scenarios, storing network parameters at each…

Machine Learning · Computer Science 2024-11-22 Sanchar Palit , Biplab Banerjee , Subhasis Chaudhuri

It is always a hot and difficult point to improve the accuracy of convolutional neural network model and speed up its convergence. Based on the idea of small world network, a random edge adding algorithm is proposed to improve the…

Neural and Evolutionary Computing · Computer Science 2020-09-01 Xuanyu Shu , Jin Zhang , Sen Tian , Sheng chen , Lingyu Chen

Network embedding is an effective technique to learn the low-dimensional representations of nodes in networks. Real-world networks are usually with multiplex or having multi-view representations from different relations. Recently, there has…

Machine Learning · Computer Science 2022-03-08 Qifan Wang , Yi Fang , Anirudh Ravula , Ruining He , Bin Shen , Jingang Wang , Xiaojun Quan , Dongfang Liu

In this work we present a system based on a Deep Learning approach, by using a Convolutional Neural Network, capable of classifying protein chains of amino acids based on the protein description contained in the Protein Data Bank. Each…

Machine Learning · Computer Science 2021-11-04 Damiano Perri , Marco Simonetti , Andrea Lombardi , Noelia Faginas-Lago , Osvaldo Gervasi

The last decade has shown a tremendous success in solving various computer vision problems with the help of deep learning techniques. Lately, many works have demonstrated that learning-based approaches with suitable network architectures…

Machine Learning · Computer Science 2019-08-21 Michael Moeller , Thomas Möllenhoff , Daniel Cremers

We address the approximation of entropy solutions to initial-boundary value problems for nonlinear strictly hyperbolic conservation laws using neural networks. A general and systematic framework is introduced for the design of efficient and…

Analysis of PDEs · Mathematics 2025-09-16 Igor Ciril , Khalil Haddaoui , Yohann Tendero

Complex mechanic systems simulation is important in many real-world applications. The de-facto numeric solver using Finite Element Method (FEM) suffers from computationally intensive overhead. Though with many progress on the reduction of…

Machine Learning · Computer Science 2024-09-04 Jiasheng Shi , Fu Lin , Weixiong Rao

In this paper, we present BERN-NN as an efficient tool to perform bound propagation of Neural Networks (NNs). Bound propagation is a critical step in wide range of NN model checkers and reachability analysis tools. Given a bounded input…

Machine Learning · Computer Science 2022-11-29 Wael Fatnassi , Haitham Khedr , Valen Yamamoto , Yasser Shoukry