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Energy transport equations are derived directly from full molecular dynamics models as coarse-grained description. With the local energy chosen as the coarse-grained variables, we apply the Mori-Zwanzig formalism to derive a reduced model,…

Statistical Mechanics · Physics 2017-09-19 Weiqi Chu , Xiantao Li

The Dynamic Mode Decomposition has proved to be a very efficient technique to study dynamic data. This is entirely a data-driven approach that extracts all necessary information from data snapshots which are commonly supposed to be sampled…

Numerical Analysis · Mathematics 2023-02-01 Aleksandr Katrutsa , Sergey Utyuzhnikov , Ivan Oseledets

We discuss some mathematical aspects of the Mori-Zwanzig projection operator formalism. The core of the Mori-Zwanzig formalism is the generalised Langevin equation, which is typically derived from the Dyson-Duhamel identity. We derive the…

Mathematical Physics · Physics 2026-04-23 Christoph Widder , Tanja Schilling

In this chapter we review stochastic modelling methods in climate science. First we provide a conceptual framework for stochastic modelling of deterministic dynamical systems based on the Mori-Zwanzig formalism. The Mori-Zwanzig equations…

Atmospheric and Oceanic Physics · Physics 2016-12-23 Georg A. Gottwald , Daan T. Crommelin , Christian L. E. Franzke

The Koopman operator presents an attractive approach to achieve global linearization of nonlinear systems, making it a valuable method for simplifying the understanding of complex dynamics. While data-driven methodologies have exhibited…

Machine Learning · Computer Science 2025-05-08 Priyam Gupta , Peter J. Schmid , Denis Sipp , Taraneh Sayadi , Georgios Rigas

Fault-tolerant quantum computing requires extremely precise knowledge and control of qubit dynamics during the application of a gate. We develop a data-driven learning protocol for characterizing quantum gates that builds off previous work…

Generalized Langevin equations with non-linear forces and position-dependent linear friction memory kernels, such as commonly used to describe the effective dynamics of coarse-grained variables in molecular dynamics, are rigorously derived…

Statistical Mechanics · Physics 2022-07-07 Hadrien Vroylandt , Pierre Monmarché

Reconstruction of equations of motion from incomplete or noisy data and dimension reduction are two fundamental problems in the study of dynamical systems with many degrees of freedom. For the latter extensive efforts have been made but…

Statistical Mechanics · Physics 2011-02-08 Jianhua Xing , Kenneth S Kim

Only a subset of degrees of freedom are typically accessible or measurable in real-world systems. As a consequence, the proper setting for empirical modeling is that of partially-observed systems. Notably, data-driven models consistently…

Statistical Mechanics · Physics 2023-04-18 Adam Rupe , Velimir V. Vesselinov , James P. Crutchfield

We present a new method to approximate the Mori-Zwanzig (MZ) memory integral in generalized Langevin equations (GLEs) describing the evolution of smooth observables in high-dimensional nonlinear systems with local interactions. Building…

Numerical Analysis · Mathematics 2020-03-18 Yuanran Zhu , Daniele Venturi

Fuzzy modeling has many advantages over the non-fuzzy methods, such as robustness against uncertainties and less sensitivity to the varying dynamics of nonlinear systems. Data-driven fuzzy modeling needs to extract fuzzy rules from the…

Systems and Control · Computer Science 2018-06-08 Erick de la Rosa , Wen Yu

In this paper we consider the problem of deriving approximate autonomous dynamics for a number of variables of a dynamical system, which are weakly coupled to the remaining variables. In a previous paper we have used the Ruelle response…

Statistical Mechanics · Physics 2015-06-11 Jeroen Wouters , Valerio Lucarini

We examine the challenging problem of constructing reduced models for the long time prediction of systems where there is no timescale separation between the resolved and unresolved variables. In previous work we focused on the case where…

Numerical Analysis · Mathematics 2017-07-10 Jacob Price , Panos Stinis

Simulations of condensed matter systems often focus on the dynamics of a few distinguished components but require integrating the dynamics of the full system. A prime example is a molecular dynamics simulation of a (macro)molecule in…

Computational Physics · Physics 2024-03-12 Mauricio J. del Razo , Daan Crommelin , Peter G. Bolhuis

A new technique to derive delay models from systems of partial differential equations, based on the Mori-Zwanzig formalism, is used to derive a delay difference equation model for the Atlantic Multidecadal Oscillation. The Mori-Zwanzig…

Dynamical Systems · Mathematics 2021-03-17 Swinda K. J. Falkena , Courtney Quinn , Jan Sieber , Henk A. Dijkstra

We present a projection-based, stability-preserving methodology for computing time correlation functions in open quantum systems governed by generalized quantum master equations with non-Markovian effects. Building upon the memory kernel…

Quantum Physics · Physics 2026-02-12 Wei Liu , Rui-Hao Bi , Yu Su , Limin Xu , Zhennan Zhou , Yao Wang , Wenjie Dou

The Mori-Zwanzig projection formalism is widely used in studying systems with many degrees of freedom. We used a system-bath Hamiltonian system to show that the Mori's and Zwanzig's projection procedures are mutual limiting cases of each…

Statistical Mechanics · Physics 2009-04-20 Jianhua Xing

Analyzing large-scale data from simulations of turbulent flows is memory intensive, requiring significant resources. This major challenge highlights the need for data compression techniques. In this study, we apply a physics-informed Deep…

Fluid Dynamics · Physics 2022-04-20 Mohammadreza Momenifar , Enmao Diao , Vahid Tarokh , Andrew D. Bragg

Model reduction techniques have emerged as a powerful paradigm across different fronts of scientific computing. Despite their success, the provided tools and methodologies remain limited if high-dimensional dynamical systems subject to…

Computation · Statistics 2026-01-05 Noé Stauffer , Hossein Gorji , Ivan Lunati

The Dynamic-Mode Decomposition (DMD) is a well established data-driven method of finding temporally evolving linear-mode decompositions of nonlinear time series. Traditionally, this method presumes that all relevant dimensions are sampled…

Dynamical Systems · Mathematics 2021-01-13 Christopher W. Curtis , Daniel Jay Alford-Lago