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Sequencing a genome to determine an individual's DNA produces an enormous number of short nucleotide subsequences known as reads, which must be reassembled to reconstruct the full genome. We present a method for analyzing this type of data…

Machine Learning · Computer Science 2025-05-23 Filip Thor , Carl Nettelblad

Phaseless diffraction measurements recorded by a CCD detector are often affected by Poisson noise. In this paper, we propose a dictionary learning model by employing patches based sparsity to denoise Poisson phaseless measurement. The model…

Optimization and Control · Mathematics 2019-06-10 Huibin Chang , Stefano Marchesini

Fast and reliable validation of novel designs in complex physical systems such as batteries is critical to accelerating technological innovation. However, battery research and development remain bottlenecked by the prohibitively high time…

Machine Learning · Computer Science 2025-09-26 Jiawei Zhang , Yifei Zhang , Baozhao Yi , Yao Ren , Qi Jiao , Hanyu Bai , Weiran Jiang , Ziyou Song

We introduce a local machine-learning method for predicting the electron densities of periodic systems. The framework is based on a numerical, atom-centred auxiliary basis, which enables an accurate expansion of the all-electron density in…

Chemical Physics · Physics 2021-11-10 Alan M. Lewis , Andrea Grisafi , Michele Ceriotti , Mariana Rossi

We introduce a deep learning (DL) framework for inverse problems in imaging, and demonstrate the advantages and applicability of this approach in passive synthetic aperture radar (SAR) image reconstruction. We interpret image recon-…

Computer Vision and Pattern Recognition · Computer Science 2018-03-14 Bariscan Yonel , Eric Mason , Birsen Yazıcı

Estimating the ratio of two probability densities from a finite number of observations is a central machine learning problem. A common approach is to construct estimators using binary classifiers that distinguish observations from the two…

Machine Learning · Computer Science 2025-01-28 Werner Zellinger

The Deep Learning revolution has enabled groundbreaking achievements in recent years. From breast cancer detection to protein folding, deep learning algorithms have been at the core of very important advancements. However, these modern…

Computer Vision and Pattern Recognition · Computer Science 2024-03-01 Bonaventure F. P. Dossou

Quantitative Structure-Activity Relationship (QSAR) modeling is key in drug discovery, but classical methods face limitations when handling high-dimensional data and capturing complex molecular interactions. This research proposes enhancing…

Quantum Physics · Physics 2025-07-09 Alejandro Giraldo , Daniel Ruiz , Mariano Caruso , Guido Bellomo

Active Learning (AL) and Semi-supervised Learning are two techniques that have been studied to reduce the high cost of deep learning by using a small amount of labeled data and a large amount of unlabeled data. To improve the accuracy of…

Computer Vision and Pattern Recognition · Computer Science 2023-03-17 Jaeseung Lim , Jongkeun Na , Nojun Kwak

A density matrix describes the statistical state of a quantum system. It is a powerful formalism to represent both the quantum and classical uncertainty of quantum systems and to express different statistical operations such as measurement,…

Machine Learning · Computer Science 2024-05-01 Fabio A. González , Alejandro Gallego , Santiago Toledo-Cortés , Vladimir Vargas-Calderón

The objective of deep metric learning (DML) is to learn embeddings that can capture semantic similarity and dissimilarity information among data points. Existing pairwise or tripletwise loss functions used in DML are known to suffer from…

Computer Vision and Pattern Recognition · Computer Science 2021-03-22 Xinshao Wang , Yang Hua , Elyor Kodirov , Neil M. Robertson

Removing the shape noise from the observed weak lensing field, i.e., denoising, enhances the potential of WL by accessing information at small scales where the shape noise dominates without denoising. We utilise two machine learning (ML)…

Cosmology and Nongalactic Astrophysics · Physics 2026-05-13 Shohei D. Aoyama , Ken Osato , Masato Shirasaki

Deep learning techniques have achieved significant success in Synthetic Aperture Radar (SAR) target recognition using predefined datasets in static scenarios. However, real-world applications demand that models incrementally learn new…

Computer Vision and Pattern Recognition · Computer Science 2025-01-20 George Karantaidis , Athanasios Pantsios , Ioannis Kompatsiaris , Symeon Papadopoulos

For large libraries of small molecules, exhaustive combinatorial chemical screens become infeasible to perform when considering a range of disease models, assay conditions, and dose ranges. Deep learning models have achieved state of the…

Discovery of the molecular candidates for applications in drug targets, biomolecular systems, catalysts, photovoltaics, organic electronics, and batteries, necessitates development of machine learning algorithms capable of rapid exploration…

Machine Learning · Computer Science 2023-12-12 Ayana Ghosh , Sergei V. Kalinin , Maxim A. Ziatdinov

Deep learning models that leverage large datasets are often the state of the art for modelling molecular properties. When the datasets are smaller (< 2000 molecules), it is not clear that deep learning approaches are the right modelling…

Computational Engineering, Finance, and Science · Computer Science 2022-12-07 Gary Tom , Riley J. Hickman , Aniket Zinzuwadia , Afshan Mohajeri , Benjamin Sanchez-Lengeling , Alan Aspuru-Guzik

We introduce a class of auto-encoder neural networks tailored to data from the natural exponential family (e.g., count data). The architectures are inspired by the problem of learning the filters in a convolutional generative model with…

Machine Learning · Computer Science 2020-06-30 Bahareh Tolooshams , Andrew H. Song , Simona Temereanca , Demba Ba

Gene expression profiles have been widely used to characterize patterns of cellular responses to diseases. As data becomes available, scalable learning toolkits become essential to processing large datasets using deep learning models to…

Machine Learning · Computer Science 2019-02-01 Ya Ju Fan , Jonathan E. Allen , Sam Ade Jacobs , Brian C. Van Essen

Dense embedding models are commonly deployed in commercial search engines, wherein all the document vectors are pre-computed, and near-neighbor search (NNS) is performed with the query vector to find relevant documents. However, the…

Machine Learning · Computer Science 2020-09-01 Tharun Medini , Beidi Chen , Anshumali Shrivastava

Semi-supervised object detection (SSOD) aims to facilitate the training and deployment of object detectors with the help of a large amount of unlabeled data. Though various self-training based and consistency-regularization based SSOD…

Computer Vision and Pattern Recognition · Computer Science 2022-04-18 Binghui Chen , Pengyu Li , Xiang Chen , Biao Wang , Lei Zhang , Xian-Sheng Hua