Related papers: Query-Focused Extractive Summarisation for Finding…
This paper presents Macquarie University's participation to the two most recent BioASQ Synergy Tasks (as per June 2022), and to the BioASQ10 Task~B (BioASQ10b), Phase~B. In these tasks, participating systems are expected to generate complex…
Macquarie University's contribution to the BioASQ challenge (Task 5b Phase B) focused on the use of query-based extractive summarisation techniques for the generation of the ideal answers. Four runs were submitted, with approaches ranging…
This paper presents the participation of Macquarie University and the Australian National University for Task B Phase B of the 2020 BioASQ Challenge (BioASQ8b). Our overall framework implements Query focused multi-document extractive…
Task B Phase B of the 2019 BioASQ challenge focuses on biomedical question answering. Macquarie University's participation applies query-based multi-document extractive summarisation techniques to generate a multi-sentence answer given the…
This paper describes Macquarie University's contribution to the BioASQ Challenge (BioASQ 6b, Phase B). We focused on the extraction of the ideal answers, and the task was approached as an instance of query-based multi-document…
In this paper, we detail our submission to the 2019, 7th year, BioASQ competition. We present our approach for Task-7b, Phase B, Exact Answering Task. These Question Answering (QA) tasks include Factoid, Yes/No, List Type Question…
Biomedical text mining and question-answering are essential yet highly demanding tasks, particularly in the face of the exponential growth of biomedical literature. In this work, we present our participation in the 13th edition of the…
We present AUEB's submissions to the BioASQ 6 document and snippet retrieval tasks (parts of Task 6b, Phase A). Our models use novel extensions to deep learning architectures that operate solely over the text of the query and candidate…
The automation of text summarisation of biomedical publications is a pressing need due to the plethora of information available on-line. This paper explores the impact of several supervised machine learning approaches for extracting…
We present CAiRE-COVID, a real-time question answering (QA) and multi-document summarization system, which won one of the 10 tasks in the Kaggle COVID-19 Open Research Dataset Challenge, judged by medical experts. Our system aims to tackle…
Advancing the state-of-the-art in large-scale biomedical semantic indexing and question answering is the main focus of the BioASQ challenge. BioASQ organizes respective tasks where different teams develop systems that are evaluated on the…
Abstract. When writing an academic paper, researchers often spend considerable time reviewing and summarizing papers to extract relevant citations and data to compose the Introduction and Related Work sections. To address this problem, we…
This paper describes our submission to the 2017 BioASQ challenge. We participated in Task B, Phase B which is concerned with biomedical question answering (QA). We focus on factoid and list question, using an extractive QA model, that is,…
To select the most relevant sentences of a document, it uses an optimal decision algorithm that combines several metrics. The metrics processes, weighting and extract pertinence sentences by statistical and informational algorithms. This…
With the COVID-19 pandemic, there is a growing urgency for medical community to keep up with the accelerating growth in the new coronavirus-related literature. As a result, the COVID-19 Open Research Dataset Challenge has released a corpus…
This thesis work falls within the framework of question answering (QA) in the biomedical domain where several specific challenges are addressed, such as specialized lexicons and terminologies, the types of treated questions, and the…
Can language models read biomedical texts and explain the biomedical mechanisms discussed? In this work we introduce a biomedical mechanism summarization task. Biomedical studies often investigate the mechanisms behind how one entity (e.g.,…
With the explosive growth of scientific publications, making the synthesis of scientific knowledge and fact checking becomes an increasingly complex task. In this paper, we propose a multi-task approach for verifying the scientific…
Medical dialogue summarization is challenging due to the unstructured nature of medical conversations, the use of medical terminology in gold summaries, and the need to identify key information across multiple symptom sets. We present a…
This paper presents the approach that we employed to tackle the EMNLP WNUT-2020 Shared Task 2 : Identification of informative COVID-19 English Tweets. The task is to develop a system that automatically identifies whether an English Tweet…