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Next Generation Sequencing can sample the whole genome (WGS) or the 1-2% of the genome that codes for proteins called the whole exome (WES). Machine learning approaches to variant calling achieve high accuracy in WGS data, but the reduced…

Genomics · Quantitative Biology 2019-11-19 Ren Yi , Pi-Chuan Chang , Gunjan Baid , Andrew Carroll

In this paper a data mining approach for variable selection and knowledge extraction from datasets is presented. The approach is based on unguided symbolic regression (every variable present in the dataset is treated as the target variable…

Neural and Evolutionary Computing · Computer Science 2013-09-24 Michael Kommenda , Gabriel Kronberger , Christoph Feilmayr , Michael Affenzeller

The computational resources required to train a model have been increasing since the inception of deep networks. Training neural networks on massive datasets have become a challenging and time-consuming task. So, there arises a need to…

Machine Learning · Computer Science 2022-09-07 Devvrat Joshi , Janvi Thakkar , Siddharth Soni , Shril Mody , Rohan Patil , Nipun Batra

The widespread adoption of generative models such as Stable Diffusion and ChatGPT has made them increasingly attractive targets for malicious exploitation, particularly through data poisoning. Existing poisoning attacks compromising…

Machine Learning · Computer Science 2025-11-10 Mathias Lundteigen Mohus , Jingyue Li , Zhirong Yang

Large language models (LLMs) have achieved remarkable progress in code generation, largely driven by the availability of high-quality code datasets for effective training. To further improve data quality, numerous training data optimization…

Software Engineering · Computer Science 2026-01-01 Shiqi Kuang , Zhao Tian , Tao Xiao , Dong Wang , Junjie Chen

Many real-world systems can be described by mathematical models that are human-comprehensible, easy to analyze and help explain the system's behavior. Symbolic regression is a method that can automatically generate such models from data.…

Neural and Evolutionary Computing · Computer Science 2023-06-28 Jiří Kubalík , Erik Derner , Robert Babuška

Fine-tuning pretrained contextual word embedding models to supervised downstream tasks has become commonplace in natural language processing. This process, however, is often brittle: even with the same hyperparameter values, distinct random…

Computation and Language · Computer Science 2020-02-19 Jesse Dodge , Gabriel Ilharco , Roy Schwartz , Ali Farhadi , Hannaneh Hajishirzi , Noah Smith

In this paper, we investigate the learning-augmented $k$-median clustering problem, which aims to improve the performance of traditional clustering algorithms by preprocessing the point set with a predictor of error rate $\alpha \in [0,1)$.…

Data Structures and Algorithms · Computer Science 2026-03-12 Kangke Cheng , Shihong Song , Guanlin Mo , Hu Ding

Symbolic regression is a powerful system identification technique in industrial scenarios where no prior knowledge on model structure is available. Such scenarios often require specific model properties such as interpretability, robustness,…

Subsampling algorithms are a natural approach to reduce data size before fitting models on massive datasets. In recent years, several works have proposed methods for subsampling rows from a data matrix while maintaining relevant information…

Machine Learning · Computer Science 2023-01-18 Fred Lu , Edward Raff , James Holt

A data set sampled from a certain population is biased if the subgroups of the population are sampled at proportions that are significantly different from their underlying proportions. Training machine learning models on biased data sets…

Machine Learning · Computer Science 2021-08-30 Jing An , Lexing Ying , Yuhua Zhu

Generative adversarial network (GAN) continues to be a popular research direction due to its high generation quality. It is observed that many state-of-the-art GANs generate samples that are more similar to the training set than a holdout…

Machine Learning · Computer Science 2022-10-25 Andrew Bai , Cho-Jui Hsieh , Wendy Kan , Hsuan-Tien Lin

Time series modeling techniques based on deep learning have seen many advancements in recent years, especially in data-abundant settings and with the central aim of learning global models that can extract patterns across multiple time…

Machine Learning · Computer Science 2020-05-21 Stephan Rabanser , Tim Januschowski , Valentin Flunkert , David Salinas , Jan Gasthaus

This study uses stacked generalization, which is a two-step process of combining machine learning methods, called meta or super learners, for improving the performance of algorithms in step one (by minimizing the error rate of each…

Machine Learning · Computer Science 2020-04-07 Kathleen Kerwin , Nathaniel D. Bastian

Epsilon-lexicase selection is a parent selection method in genetic programming that has been successfully applied to symbolic regression problems. Recently, the combination of random subsampling with lexicase selection significantly…

Neural and Evolutionary Computing · Computer Science 2023-02-10 Alina Geiger , Dominik Sobania , Franz Rothlauf

Although there is no shortage of clustering algorithms proposed in the literature, the question of the most relevant strategy for clustering compositional data (i.e., data made up of profiles, whose rows belong to the simplex) remains…

Statistics Theory · Mathematics 2018-05-17 Antoine Godichon-Baggioni , Cathy Maugis-Rabusseau , Andrea Rau

Due to the progressive growth of the amount of data available in a wide variety of scientific fields, it has become more difficult to ma- nipulate and analyze such information. Even though datasets have grown in size, the K-means algorithm…

Machine Learning · Statistics 2016-05-11 Marco Capó , Aritz Pérez , José Antonio Lozano

Incremental gradient (IG) methods, such as stochastic gradient descent and its variants are commonly used for large scale optimization in machine learning. Despite the sustained effort to make IG methods more data-efficient, it remains an…

Machine Learning · Computer Science 2020-11-18 Baharan Mirzasoleiman , Jeff Bilmes , Jure Leskovec

Bagging, a powerful ensemble method from machine learning, improves the performance of unstable predictors. Although the power of Bagging has been shown mostly in classification problems, we demonstrate the success of employing Bagging in…

Machine Learning · Statistics 2019-05-03 Luoluo Liu , Sang Peter Chin , Trac D. Tran

Machine learning models have achieved remarkable success in various real-world applications such as data science, computer vision, and natural language processing. However, model training in machine learning requires large-scale data sets…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-02 Xidong Wu , Preston Brazzle , Stephen Cahoon