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Gene expression data is often collected in time series experiments, under different experimental conditions. There may be genes that have very different gene expression profiles over time, but that adjust their gene expression patterns in…

Methodology · Statistics 2021-12-02 Susana Conde , Shahin Tavakoli , Daphne Ezer

Deep learning's success has been attributed to the training of large, overparameterized models on massive amounts of data. As this trend continues, model training has become prohibitively costly, requiring access to powerful computing…

Machine Learning · Computer Science 2021-11-25 Ravi S Raju , Kyle Daruwalla , Mikko Lipasti

Machine Learning methods have of late made significant efforts to solving multidisciplinary problems in the field of cancer classification using microarray gene expression data. Feature subset selection methods can play an important role in…

Computational Engineering, Finance, and Science · Computer Science 2013-03-04 G. Prat , Ll. Belanche

Deep learning models have become widely adopted in various domains, but their performance heavily relies on a vast amount of data. Datasets often contain a large number of irrelevant or redundant samples, which can lead to computational…

Audio and Speech Processing · Electrical Eng. & Systems 2023-09-22 Boris Bergsma , Marta Brzezinska , Oleg V. Yazyev , Milos Cernak

Symbolic regression is a machine learning technique, and it has seen many advancements in recent years, especially in genetic programming approaches (GPSR). Furthermore, it has been known for many years that constant optimization of…

Machine Learning · Computer Science 2024-12-04 L. G. A dos Reis , V. L. P. S. Caminha , T. J. P. Penna

Clustering is one of the most fundamental tools in the artificial intelligence area, particularly in the pattern recognition and learning theory. In this paper, we propose a simple, but novel approach for variance-based k-clustering tasks,…

Machine Learning · Computer Science 2020-09-17 Yicheng Xu , Vincent Chau , Chenchen Wu , Yong Zhang , Vassilis Zissimopoulos , Yifei Zou

We study clustering methods for binary data, first defining aggregation criteria that measure the compactness of clusters. Five new and original methods are introduced, using neighborhoods and population behavior combinatorial optimization…

Sample re-weighting strategies provide a promising mechanism to deal with imperfect training data in machine learning, such as noisily labeled or class-imbalanced data. One such strategy involves formulating a bi-level optimization problem…

Machine Learning · Computer Science 2023-02-10 Yinjun Wu , Adam Stein , Jacob Gardner , Mayur Naik

K-means plays a vital role in data mining and is the simplest and most widely used algorithm under the Euclidean Minimum Sum-of-Squares Clustering (MSSC) model. However, its performance drastically drops when applied to vast amounts of…

Machine Learning · Computer Science 2023-11-27 Rustam Mussabayev , Nenad Mladenovic , Bassem Jarboui , Ravil Mussabayev

This work investigates the ``small-vs-large gap'', where repeating on fewer samples can lead to compute saving during training compared to using a larger dataset. This is observed across algorithmic tasks, architectures and optimizers and…

Machine Learning · Computer Science 2026-05-21 Jingwen Liu , Ezra Edelman , Surbhi Goel , Bingbin Liu

Computational analysis methods including machine learning have a significant impact in the fields of genomics and medicine. High-throughput gene expression analysis methods such as microarray technology and RNA sequencing produce enormous…

Genomics · Quantitative Biology 2022-09-28 Nikita Bhandari , Rahee Walambe , Ketan Kotecha , Satyajeet Khare

Collective behaviors are typically hard to model. The scale of the swarm, the large number of interactions, and the richness and complexity of the behaviors are factors that make it difficult to distill a collective behavior into simple…

Multiagent Systems · Computer Science 2022-05-03 Stephen Powers , Carlo Pinciroli

Machine learning techniques always aim to reduce the generalized prediction error. In order to reduce it, ensemble methods present a good approach combining several models that results in a greater forecasting capacity. The Random Machines…

Machine Learning · Statistics 2020-03-31 Anderson Ara , Mateus Maia , Samuel Macêdo , Francisco Louzada

Finetuning large language models on instruction data is crucial for enhancing pre-trained knowledge and improving instruction-following capabilities. As instruction datasets proliferate, selecting optimal data for effective training becomes…

Computation and Language · Computer Science 2024-09-18 Simon Yu , Liangyu Chen , Sara Ahmadian , Marzieh Fadaee

We investigate the addition of constraints on the function image and its derivatives for the incorporation of prior knowledge in symbolic regression. The approach is called shape-constrained symbolic regression and allows us to enforce e.g.…

Neural and Evolutionary Computing · Computer Science 2021-06-01 Gabriel Kronberger , Fabricio Olivetti de França , Bogdan Burlacu , Christian Haider , Michael Kommenda

The task of labeling data for training deep neural networks is daunting and tedious, requiring millions of labels to achieve the current state-of-the-art results. Such reliance on large amounts of labeled data can be relaxed by exploiting…

Machine Learning · Computer Science 2016-02-17 Aysegul Dundar , Jonghoon Jin , Eugenio Culurciello

Mathematical expressions play a central role in scientific discovery. Symbolic regression aims to automatically discover such expressions from given numerical data. Recently, Neural symbolic regression (NSR) methods that involve…

Machine Learning · Computer Science 2026-02-03 Shun Sato , Issei Sato

The great success of deep learning heavily relies on increasingly larger training data, which comes at a price of huge computational and infrastructural costs. This poses crucial questions that, do all training data contribute to model's…

Machine Learning · Computer Science 2023-02-28 Shuo Yang , Zeke Xie , Hanyu Peng , Min Xu , Mingming Sun , Ping Li

In this chapter we take a closer look at the distribution of symbolic regression models generated by genetic programming in the search space. The motivation for this work is to improve the search for well-fitting symbolic regression models…

The definition of a concise and effective testbed for Genetic Programming (GP) is a recurrent matter in the research community. This paper takes a new step in this direction, proposing a different approach to measure the quality of the…

Neural and Evolutionary Computing · Computer Science 2018-05-29 Luiz Otavio Vilas Boas Oliveira , Joao Francisco Barreto da Silva Martins , Luis Fernando Miranda , Gisele Lobo Pappa