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Comparing networks is essential for a number of downstream tasks, from clustering to anomaly detection. Despite higher-order interactions being critical for understanding the dynamics of complex systems, traditional approaches for network…

Physics and Society · Physics 2025-11-03 Helcio Felippe , Alec Kirkley , Federico Battiston

Graph matching is the process of computing the similarity between two graphs. Depending on the requirement, it can be exact or inexact. Exact graph matching requires a strict correspondence between nodes of two graphs, whereas inexact…

Social and Information Networks · Computer Science 2022-01-13 Shri Prakash Dwivedi

We present a novel graph embedding space (i.e., a set of measures on graphs) for performing statistical analyses of networks. Key improvements over existing approaches include discovery of "motif-hubs" (multiple overlapping significant…

Disordered Systems and Neural Networks · Physics 2007-05-23 Etay Ziv , Robin Koytcheff , Manuel Middendorf , Chris Wiggins

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

Mining dense quasi-cliques is a well-known clustering task with applications ranging from social networks over collaboration graphs to document analysis. Recent work has extended this task to multiple graphs; i.e. the goal is to find groups…

Artificial Intelligence · Computer Science 2018-10-04 Roberto Alonso , Stephan Günnemann

Social media data are often modeled as heterogeneous graphs with multiple types of nodes and edges. We present a discovery algorithm that first chooses a "background" graph based on a user's analytical interest and then automatically…

Social and Information Networks · Computer Science 2021-02-19 Subhasis Dasgupta , Amarnath Gupta

The Subgraph Matching (SM) problem consists of finding all the embeddings of a given small graph, called the query, into a large graph, called the target. The SM problem has been widely studied for simple graphs, i.e. graphs where there is…

Quantifying the similarity between two graphs is a fundamental algorithmic problem at the heart of many data analysis tasks for graph-based data. In this paper, we study the computational complexity of a family of similarity measures based…

Discrete Mathematics · Computer Science 2022-07-04 Timo Gervens , Martin Grohe

Subgraph recognition aims at discovering a compressed substructure of a graph that is most informative to the graph property. It can be formulated by optimizing Graph Information Bottleneck (GIB) with a mutual information estimator.…

Machine Learning · Computer Science 2022-04-05 Junchi Yu , Jie Cao , Ran He

Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…

Data Structures and Algorithms · Computer Science 2021-08-10 Cheng Mao , Mark Rudelson , Konstantin Tikhomirov

The subgraph enumeration problem asks us to find all subgraphs of a target graph that are isomorphic to a given pattern graph. Determining whether even one such isomorphic subgraph exists is NP-complete---and therefore finding all such…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-05-29 Raphael Kimmig , Henning Meyerhenke , Darren Strash

We give the first fully dynamic algorithm which maintains a $(1-\epsilon)$-approximate densest subgraph in worst-case time $\text{poly}(\log n, \epsilon^{-1})$ per update. Dense subgraph discovery is an important primitive for many…

Data Structures and Algorithms · Computer Science 2020-03-12 Saurabh Sawlani , Junxing Wang

Social media data are often modeled as heterogeneous graphs with multiple types of nodes and edges. We present a discovery algorithm that first chooses a "background" graph based on a user's analytical interest and then automatically…

Social and Information Networks · Computer Science 2021-04-23 Subhasis Dasgupta , Amarnath Gupta

Subgraph counting aims to count occurrences of a template T in a given network G(V, E). It is a powerful graph analysis tool and has found real-world applications in diverse domains. Scaling subgraph counting problems is known to be memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-06 Langshi Chen , Jiayu Li , Ariful Azad , Cenk Sahinalp , Madhav Marathe , Anil Vullikanti , Andrey Nikolaev , Egor Smirnov , Ruslan Israfilov , Judy Qiu

Dense subgraph discovery is an important graph-mining primitive with a variety of real-world applications. One of the most well-studied optimization problems for dense subgraph discovery is the densest subgraph problem, where given an…

Data Structures and Algorithms · Computer Science 2021-10-26 Francesco Bonchi , David García-Soriano , Atsushi Miyauchi , Charalampos E. Tsourakakis

Hypergraphs naturally represent group interactions, which are omnipresent in many domains: collaborations of researchers, co-purchases of items, joint interactions of proteins, to name a few. In this work, we propose tools for answering the…

Social and Information Networks · Computer Science 2020-07-21 Geon Lee , Jihoon Ko , Kijung Shin

Consider the following stochastic matching problem. Given a graph $G=(V, E)$, an unknown subgraph $G_p = (V, E_p)$ is realized where $E_p$ includes every edge of $E$ independently with some probability $p \in (0, 1]$. The goal is to query a…

Data Structures and Algorithms · Computer Science 2025-06-25 Amir Azarmehr , Soheil Behnezhad , Alma Ghafari , Ronitt Rubinfeld

For the past decades, the \textit{subgraph similarity search} over a large-scale data graph has become increasingly important and crucial in many real-world applications, such as social network analysis, bioinformatics network analytics,…

Databases · Computer Science 2025-06-03 Qi Wen , Yutong Ye , Xiang Lian , Mingsong Chen

Quasi-cliques are dense incomplete subgraphs of a graph that generalize the notion of cliques. Enumerating quasi-cliques from a graph is a robust way to detect densely connected structures with applications to bio-informatics and social…

Data Structures and Algorithms · Computer Science 2020-02-04 Seyed-Vahid Sanei-Mehri , Apurba Das , Srikanta Tirthapura

Dense subgraph discovery aims to find a dense component in edge-weighted graphs. This is a fundamental graph-mining task with a variety of applications and thus has received much attention recently. Although most existing methods assume…

Machine Learning · Computer Science 2020-06-25 Yuko Kuroki , Atsushi Miyauchi , Junya Honda , Masashi Sugiyama