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Automated extraction of concepts from patient clinical records is an essential facilitator of clinical research. For this reason, the 2010 i2b2/VA Natural Language Processing Challenges for Clinical Records introduced a concept extraction…

Machine Learning · Statistics 2016-11-28 Raghavendra Chalapathy , Ehsan Zare Borzeshi , Massimo Piccardi

Loss to followup is a significant issue in healthcare and has serious consequences for a study's validity and cost. Methods available at present for recovering loss to followup information are restricted by their expressive capabilities and…

Machine Learning · Computer Science 2018-02-14 Lovedeep Gondara , Ke Wang

Ensuring clinical data privacy while preserving utility is critical for AI-driven healthcare and data analytics. Existing de-identification (De-ID) methods, including rule-based techniques, deep learning models, and large language models…

Artificial Intelligence · Computer Science 2025-07-28 Praphul Singh , Charlotte Dzialo , Jangwon Kim , Sumana Srivatsa , Irfan Bulu , Sri Gadde , Krishnaram Kenthapadi

Diagnosis of a clinical condition is a challenging task, which often requires significant medical investigation. Previous work related to diagnostic inferencing problems mostly consider multivariate observational data (e.g. physiological…

Computation and Language · Computer Science 2017-01-05 Aaditya Prakash , Siyuan Zhao , Sadid A. Hasan , Vivek Datla , Kathy Lee , Ashequl Qadir , Joey Liu , Oladimeji Farri

Healthcare providers usually record detailed notes of the clinical care delivered to each patient for clinical, research, and billing purposes. Due to the unstructured nature of these narratives, providers employ dedicated staff to assign…

Computation and Language · Computer Science 2022-08-03 Chufan Gao , Mononito Goswami , Jieshi Chen , Artur Dubrawski

Dementia is under-recognized in the community, under-diagnosed by healthcare professionals, and under-coded in claims data. Information on cognitive dysfunction, however, is often found in unstructured clinician notes within medical records…

In recent years extracting relevant information from biomedical and clinical texts such as research articles, discharge summaries, or electronic health records have been a subject of many research efforts and shared challenges. Relation…

Computation and Language · Computer Science 2016-07-01 Sunil Kumar Sahu , Ashish Anand , Krishnadev Oruganty , Mahanandeeshwar Gattu

Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…

Computation and Language · Computer Science 2020-04-08 Allen Schmaltz , Andrew Beam

Text classification of unseen classes is a challenging Natural Language Processing task and is mainly attempted using two different types of approaches. Similarity-based approaches attempt to classify instances based on similarities between…

Computation and Language · Computer Science 2023-07-25 Tim Schopf , Daniel Braun , Florian Matthes

Medical imaging has significantly advanced computer-aided diagnosis, yet its re-identification (ReID) risks raise critical privacy concerns, calling for de-identification (DeID) techniques. Unfortunately, existing DeID methods neither…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Yuan Tian , Shuo Wang , Rongzhao Zhang , Zijian Chen , Yankai Jiang , Chunyi Li , Xiangyang Zhu , Fang Yan , Qiang Hu , XiaoSong Wang , Guangtao Zhai

In this study we address the problem of training a neuralnetwork for language identification using both labeled and unlabeled speech samples in the form of i-vectors. We propose a neural network architecture that can also handle out-of-set…

Computation and Language · Computer Science 2016-04-04 Ehud Ben-Reuven , Jacob Goldberger

A method to identify probable diseases from the unstructured textual input (eg, health forum posts) by incorporating a lexicographic and semantic feature based two-phase text classification module and a symptom-disease correlation-based…

Information Retrieval · Computer Science 2024-09-05 Fahim Faisal , Shafkat Ahmed Bhuiyan , Abu Raihan Mostofa Kamal

Learning from fully-unlabeled data is challenging in Multimedia Forensics problems, such as Person Re-Identification and Text Authorship Attribution. Recent self-supervised learning methods have shown to be effective when dealing with…

Computer Vision and Pattern Recognition · Computer Science 2023-07-03 Gabriel Bertocco , Antônio Theophilo , Fernanda Andaló , Anderson Rocha

International Classification of Diseases(ICD) is an authoritative health care classification system of different diseases and conditions for clinical and management purposes. Considering the complicated and dedicated process to assign…

Computation and Language · Computer Science 2022-01-13 Haoran Shi , Pengtao Xie , Zhiting Hu , Ming Zhang , Eric P. Xing

ICD coding is a process of assigning the International Classification of Disease diagnosis codes to clinical/medical notes documented by health professionals (e.g. clinicians). This process requires significant human resources, and thus is…

Computation and Language · Computer Science 2020-07-14 Thanh Vu , Dat Quoc Nguyen , Anthony Nguyen

This study proposes a Transformer-based longitudinal modeling method to address challenges in clinical risk classification with heterogeneous Electronic Health Record (EHR) data, including irregular temporal patterns, large modality…

Machine Learning · Computer Science 2025-11-07 Anzhuo Xie , Wei-Chen Chang

The text of clinical notes can be a valuable source of patient information and clinical assessments. Historically, the primary approach for exploiting clinical notes has been information extraction: linking spans of text to concepts in a…

Computation and Language · Computer Science 2019-06-11 Sarah Wiegreffe , Edward Choi , Sherry Yan , Jimeng Sun , Jacob Eisenstein

In this paper, we consider the patient similarity matching problem over a cancer cohort of more than 220,000 patients. Our approach first leverages on Word2Vec framework to embed ICD codes into vector-valued representation. We then propose…

Machine Learning · Computer Science 2016-12-07 Dang Nguyen , Wei Luo , Dinh Phung , Svetha Venkatesh

Use of medical data, also known as electronic health records, in research helps develop and advance medical science. However, protecting patient confidentiality and identity while using medical data for analysis is crucial. Medical data can…

Artificial Intelligence · Computer Science 2018-10-17 Vithya Yogarajan , Michael Mayo , Bernhard Pfahringer

Sequence labeling is a widely used method for named entity recognition and information extraction from unstructured natural language data. In clinical domain one major application of sequence labeling involves extraction of medical entities…

Computation and Language · Computer Science 2016-08-03 Abhyuday Jagannatha , Hong Yu