Related papers: Arbitrary-length analogs to de Bruijn sequences
A (non-circular) de Bruijn sequence w of order n is a word such that every word of length n appears exactly once in w as a factor. In this paper, we generalize the concept to a multi-shift setting: a multi-shift de Bruijn sequence tau(m,n)…
John Tromp introduced the so-called 'binary lambda calculus' as a way to encode lambda terms in terms of 0-1-strings using the de Bruijn representation along with a weighting scheme. Later, Grygiel and Lescanne conjectured that the number…
We present an iterative algorithm for solving a class of \\nonlinear Laplacian system of equations in $\tilde{O}(k^2m \log(kn/\epsilon))$ iterations, where $k$ is a measure of nonlinearity, $n$ is the number of variables, $m$ is the number…
We design, implement and test a simple algorithm which computes the approximate entropy of a finite binary string of arbitrary length. The algorithm uses a weighted average of the Shannon Entropies of the string and all but the last binary…
Universal compression of patterns of sequences generated by independently identically distributed (i.i.d.) sources with unknown, possibly large, alphabets is investigated. A pattern is a sequence of indices that contains all consecutive…
A large set of signals can sometimes be described sparsely using a dictionary, that is, every element can be represented as a linear combination of few elements from the dictionary. Algorithms for various signal processing applications,…
A two-dimensional string is simply a two-dimensional array. We continue the study of the combinatorial properties of repetitions in such strings over the binary alphabet, namely the number of distinct tandems, distinct quartics, and runs.…
Two words $u$ and $v$ are $k$-abelian equivalent if, for each word $x$ of length at most $k$, $x$ occurs equally many times as a factor in both $u$ and $v$. The notion of $k$-abelian equivalence is an intermediate notion between the abelian…
Chen, Kitaev, M\"{u}tze, and Sun recently introduced the notion of universal partial words, a generalization of universal words and de Bruijn sequences. Universal partial words allow for a wild-card character $\diamond$, which is a…
We give an algorithm that finds a sequence of approximations with Dirichlet coefficients bounded by a constant only depending on the dimension. The algorithm uses the LLL-algorithm for lattice basis reduction. We present a version of the…
This paper gives a short overview of Zimin words, and proves an interesting property of their distribution. Let $L_q^m$ to be the lexically ordered sequence of $q$-ary words of length $m$, and let $T_n(L_q^m)$ to be the binary sequence…
Palindromes are strings that read the same forward and backward. The computation of palindromic structures within strings is a fundamental problem in string algorithms, being motivated by potential applications in formal language theory and…
In the problem of the longest common substring with $k$ mismatches we are given two strings $X, Y$ and must find the maximal length $\ell$ such that there is a length-$\ell$ substring of $X$ and a length-$\ell$ substring of $Y$ that differ…
In this paper, we consider the problem of constructing optimal average-length binary codes under the constraint that each codeword must contain at most $D$ ones, where $D$ is a given input parameter. We provide an $O(n^2D)$-time complexity…
Partial words are sequences over a finite alphabet that may contain wildcard symbols, called holes, which match or are compatible with all letters; partial words without holes are said to be full words (or simply words). Given an infinite…
Imagine a sequence in which the first letter comes from a binary alphabet, the second letter can be chosen on an alphabet with 10 elements, the third letter can be chosen on an alphabet with 3 elements and so on. When such a sequence can be…
The Lattice String Approximation algorithm (or LSA algorithm) of M. L. Lapidus and M. van Frankenhuijsen is a procedure that approximates the complex dimensions of a nonlattice self-similar fractal string by the complex dimensions of a…
Construct recursively a long string of words w1. .. wn, such that at each step k, w k+1 is a new word with a fixed probability p $\in$ (0, 1), and repeats some preceding word with complementary probability 1 -- p. More precisely, given a…
Replicability requires that algorithmic conclusions remain consistent when rerun on independently drawn data. A central structural question is composition: given $k$ problems each admitting a $\rho$-replicable algorithm with sample…
The problem of reconstructing a sequence from the set of its length-$k$ substrings has received considerable attention due to its various applications in genomics. We study an uncoded version of this problem where multiple random sources…