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This paper presents a novel topology-aware dimensionality reduction approach aiming at accurately visualizing the cyclic patterns present in high dimensional data. To that end, we build on the Topological Autoencoders (TopoAE) formulation.…

Computational Geometry · Computer Science 2025-10-06 Mattéo Clémot , Julie Digne , Julien Tierny

A method is presented for the distributed computation of persistent homology, based on an extension of the generalized Mayer-Vietoris principle to filtered spaces. Cellular cosheaves and spectral sequences are used to compute global…

Algebraic Topology · Mathematics 2023-08-11 Iris H. R. Yoon , Robert Ghrist

Persistent homology is a powerful tool for characterizing the topology of a data set at various geometric scales. When applied to the description of molecular structures, persistent homology can capture the multiscale geometric features and…

Quantitative Methods · Quantitative Biology 2018-07-31 Zixuan Cang , Guo-Wei Wei

In topological data analysis, a point cloud data P extracted from a metric space is often analyzed by computing the persistence diagram or barcodes of a sequence of Rips complexes built on $P$ indexed by a scale parameter. Unfortunately,…

Computational Geometry · Computer Science 2016-09-27 Tamal K. Dey , Dayu Shi , Yusu Wang

Persistent homology is a popular data analysis technique that is used to capture the changing topology of a filtration associated with some simplicial complex $K$. These topological changes are summarized in persistence diagrams. We propose…

Computational Geometry · Computer Science 2018-10-11 Tamal K. Dey , Ryan Slechta

In real-world systems, the relationships and connections between components are highly complex. Real systems are often described as networks, where nodes represent objects in the system and edges represent relationships or connections…

Algebraic Topology · Mathematics 2024-06-24 Shen Zhang

One of the main reasons for topological persistence being useful in data analysis is that it is backed up by a stability (isometry) property: persistence diagrams of $1$-parameter persistence modules are stable in the sense that the…

Computational Geometry · Computer Science 2021-08-18 Tamal K. Dey , Cheng Xin

The detection of coherent structures is an important problem in fluid dynamics, particularly in geophysical applications. For instance, knowledge of how regions of fluid are isolated from each other allows prediction of the ultimate fate of…

Chaotic Dynamics · Physics 2013-05-28 Michael R. Allshouse , Jean-Luc Thiffeault

Racial segregation is a widespread social and physical phenomenon present in every city across the United States. Although prevalent nationwide, each city has a unique history of racial segregation, resulting in distinct "shapes" of…

Social and Information Networks · Computer Science 2024-10-16 Ori Friesen , Lori Ziegelmeier

Large amplitude gust encounters exhibit a range of separated flow phenomena, making them difficult to characterize using the traditional tools of aerodynamics. In this work, we propose a dynamical systems approach to gust encounters,…

Fluid Dynamics · Physics 2024-11-20 Luke Smith , Kai Fukami , Girguis Sedky , Anya Jones , Kunihiko Taira

We present a fast algorithm for global rigid symmetry detection with approximation guarantees. The algorithm is guaranteed to find the best approximate symmetry of a given shape, to within a user-specified threshold, with very high…

Computational Geometry · Computer Science 2016-09-20 Simon Korman , Roee Litman , Shai Avidan , Alex Bronstein

We prove that the existence of a $1$-Lipschitz retraction (a contraction) from a space $X$ onto its subspace $A$ implies the persistence diagram of $A$ embeds into the persistence diagram of $X$. As a tool we introduce tight injections of…

Algebraic Topology · Mathematics 2022-08-09 Žiga Virk

Building upon [2308.02636], we investigate the constraining power of persistent homology on cosmological parameters and primordial non-Gaussianity in a likelihood-free inference pipeline utilizing machine learning. We evaluate the ability…

Cosmology and Nongalactic Astrophysics · Physics 2025-09-22 Juan Calles , Jacky H. T. Yip , Gabriella Contardo , Jorge Noreña , Adam Rouhiainen , Gary Shiu

Persistent homology (PH) is a popular tool for topological data analysis that has found applications across diverse areas of research. It provides a rigorous method to compute robust topological features in discrete experimental…

Machine Learning · Computer Science 2023-07-19 Manu Aggarwal , Vipul Periwal

We bring spaces over the classifying space $BS^1$ of the circle group $S^1$ to persistence theory via the singular cohomology with coefficients in a field. Then, the {\it cohomology} interleaving distance (CohID) between spaces over $BS^1$…

Algebraic Topology · Mathematics 2025-01-17 Katsuhiko Kuribayashi , Takahito Naito , Shun Wakatsuki , Toshihiro Yamaguchi

The Vietoris-Rips filtration for an $n$-point metric space is a sequence of large simplicial complexes adding a topological structure to the otherwise disconnected space. The persistent homology is a key tool in topological data analysis…

Computational Geometry · Computer Science 2017-09-19 Vitaliy Kurlin

A metric thickening of a given metric space $X$ is any metric space admitting an isometric embedding of $X$. Thickenings have found use in applications of topology to data analysis, where one may approximate the shape of a dataset via the…

Metric Geometry · Mathematics 2024-03-27 Henry Adams , Facundo Mémoli , Michael Moy , Qingsong Wang

A fundamental tool in topological data analysis is persistent homology, which allows extraction of information from complex datasets in a robust way. Persistent homology assigns a module over a principal ideal domain to a one-parameter…

Algebraic Topology · Mathematics 2019-06-19 Heather A. Harrington , Nina Otter , Hal Schenck , Ulrike Tillmann

Persistent Homology is a widely used topological data analysis tool that creates a concise description of the topological properties of a point cloud based on a specified filtration. Most filtrations used for persistent homology depend…

Algebraic Topology · Mathematics 2024-06-05 Vincent P. Grande , Michael T. Schaub

Many multi-variate time series obtained in the natural sciences and engineering possess a repetitive behavior, as for instance state-space trajectories of industrial machines in discrete automation. Recovering the times of recurrence from…

Computational Geometry · Computer Science 2025-05-20 Simon Schindler , Elias Steffen Reich , Saverio Messineo , Simon Hoher , Stefan Huber
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