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Related papers: Packaging research artefacts with RO-Crate

200 papers

With the advent of Open Science, researchers have started to publish their research artefacts (i. e., data, software, and other products of the investigations) in order to allow others to reproduce their investigations. While this…

Digital Libraries · Computer Science 2019-05-02 Max Schröder , Frank Krüger , Sascha Spors

Scientists strive to make their datasets available in open repositories, with the goal that they be findable, accessible, interoperable, and reusable (FAIR). Although it is hard for most investigators to remember all the guiding principles…

Digital Libraries · Computer Science 2025-07-31 Mark A. Musen , Martin J. O'Connor , Josef Hardi , Marcos Martinez-Romero

We introduce Repro, an open-source library which aims at improving the reproducibility and usability of research code. The library provides a lightweight Python API for running software released by researchers within Docker containers which…

Computation and Language · Computer Science 2022-05-02 Daniel Deutsch , Dan Roth

The Micropublications semantic model for scientific claims, evidence, argumentation and annotation in biomedical publications, is a metadata model of scientific argumentation, designed to support several key requirements for exchange and…

Digital Libraries · Computer Science 2014-02-04 Tim Clark , Paolo N. Ciccarese , Carole A. Goble

Scientific publication compresses a branching, iterative research process into a linear narrative, discarding the majority of what was discovered along the way. This compilation imposes two structural costs: a Storytelling Tax, where failed…

The sharing and citation of research data is becoming increasingly recognized as an essential building block in scientific research across various fields and disciplines. Sharing research data allows other researchers to reproduce results,…

Digital Libraries · Computer Science 2023-09-22 Tim Conrad , Eloi Ferrer , Daniel Mietchen , Larissa Pusch , Johannes Stegmuller , Moritz Schubotz

In any field, finding the "leading edge" of research is an on-going challenge. Researchers cannot appease reviewers and educators cannot teach to the leading edge of their field if no one agrees on what is the state-of-the-art. Using a…

Software Engineering · Computer Science 2023-01-26 Maria Teresa Baldassarre , Neil Ernst , Ben Hermann , Tim Menzies , Rahul Yedida

This position paper argues that achieving meaningful scientific and societal advances with artificial intelligence (AI) requires a responsible, application-driven approach (RAD) to AI research. As AI is increasingly integrated into society,…

Machine Learning · Computer Science 2025-08-20 Sarah Hartman , Cheng Soon Ong , Julia Powles , Petra Kuhnert

In this study, we aim to incorporate the expertise of anonymous curators into a token-curated registry (TCR), a decentralized recommender system for collecting a list of high-quality content. This registry is important, because previous…

Digital Libraries · Computer Science 2020-01-07 Kensuke Ito , Hideyuki Tanaka

This paper presents a new challenging information extraction task in the domain of materials science. We develop an annotation scheme for marking information on experiments related to solid oxide fuel cells in scientific publications, such…

Computation and Language · Computer Science 2020-06-05 Annemarie Friedrich , Heike Adel , Federico Tomazic , Johannes Hingerl , Renou Benteau , Anika Maruscyk , Lukas Lange

Linked Data (LD) as a web--based technology enables in principle the seamless, machine--supported integration, interplay and augmentation of all kinds of knowledge, into what has been labeled a huge knowledge graph. Despite decades of web…

Digital Libraries · Computer Science 2022-05-02 Rick Szostak , Richard P. Smiraglia , Andrea Scharnhorst , Aida Slavic , Daniel Martínez-Ávila , Tobias Renwick

The aim of this article is to introduce a reporting framework for reproducible, interactive research applied to Big Clinical Data, based on open source technologies. The framework is constituted by the following three axes: (i) data, (ii)…

We provide an overview of efforts to apply and extend Schema.org for archives and archival description. The authors see the application of Schema.org and extensions as a low barrier means to publish easily consumable linked data about…

Digital Libraries · Computer Science 2022-08-26 M. A. Matienzo , Elizabeth Russey Roke , Scott Carlson

This technical note presents a reproducible workflow for converting a legacy archaeological image collection into a structured and segmentation ready dataset. The case study focuses on the Lower Palaeolithic hand axe and biface collection…

Computers and Society · Computer Science 2025-12-16 Juan Palomeque-Gonzalez

A scientific paper can be divided into two major constructs which are Metadata and Full-body text. Metadata provides a brief overview of the paper while the Full-body text contains key-insights that can be valuable to fellow researchers. To…

Digital Libraries · Computer Science 2023-08-28 Azanzi Jiomekong , Sanju Tiwari

State-of-the-art computer vision approaches rely on huge amounts of annotated data. The collection of such data is a time consuming process since it is mainly performed by humans. The literature shows that semi-automatic annotation…

Computer Vision and Pattern Recognition · Computer Science 2019-11-05 Jonas Jäger , Gereon Reus , Joachim Denzler , Viviane Wolff , Klaus Fricke-Neuderth

The problem of artifacts in whole slide image acquisition, prevalent in both clinical workflows and research-oriented settings, necessitates human intervention and re-scanning. Overcoming this challenge requires developing quality control…

Computer Vision and Pattern Recognition · Computer Science 2024-10-17 Artur Jurgas , Marek Wodzinski , Marina D'Amato , Jeroen van der Laak , Manfredo Atzori , Henning Müller

The metadata about scientific experiments published in online repositories have been shown to suffer from a high degree of representational heterogeneity---there are often many ways to represent the same type of information, such as a…

Computation and Language · Computer Science 2020-12-17 Rafael S. Gonçalves , Maulik R. Kamdar , Mark A. Musen

Due to the complexity of robotics, the reproducibility of results and experiments is one of the fundamental problems in robotics research. While the problem has been identified by the community, the approaches that address the problem…

Robotics · Computer Science 2018-01-26 Aljoscha Pörtner , Martin Hoffmann , Matthias König

Annotations allow users to associate additional information with existing resources. Using proprietary and closed systems on the Web, users are already able to annotate multimedia resources such as images, audio and video. So far, however,…

Digital Libraries · Computer Science 2011-06-28 Bernhard Haslhofer , Rainer Simon , Robert Sanderson , Herbert van de Sompel