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We present some aspects of the rheology of field-responsive suspensions, a class of field-responsive liquid matter systems possessing the ability to undergo significant changes in their strength upon application of an external field. Both…

Condensed Matter · Physics 2016-08-15 J. M. Rubí , J. M. G. Vilar

We investigate composite biopolymer networks composed of co-polymerized fibrin and gelatin networks and perform rheological measurements over a broad parameter space including strain amplitudes that go beyond the linear response regime. One…

Soft Condensed Matter · Physics 2025-08-14 Wayan A. Fontaine-Seiler , Gavin J. Donley , Emanuela Del Gado , Daniel L. Blair

We propose a novel device capable of measuring the relaxation time of viscoelastic fluids as small as 1\,ms. In contrast to most rheometers, which by their very nature are concerned with producing viscometric or nearly-viscometric flows,…

Soft Condensed Matter · Physics 2013-10-08 Josephine Zilz , Christof Schäfer , Christian Wagner , Robert J. Poole , Manuel A. Alves , Anke Lindner

Organogenesis is a tightly regulated process that has been studied experimentally for decades. Computational models can help to integrate available knowledge and to better understand the underlying regulatory logic. We are currently…

Tissues and Organs · Quantitative Biology 2012-02-03 Philipp Germann , Dzianis Menshykau , Simon Tanaka , Dagmar Iber

We present a progress report on our work on lattice Boltzmann methods for colloidal suspensions. We focus on the treatment of colloidal particles in binary solvents and on the inclusion of thermal noise. For a benchmark problem of colloids…

Soft Condensed Matter · Physics 2009-11-10 M. E. Cates , K. Stratford , R. Adhikari , P. Stansell , J. -C. Desplat , I. Pagonabarraga , A. J. Wagner

A method for the discrete particle simulation of of almost rigid, sharply edged frictional particles, such as railway ballast is proposed. In difference to Molecular Dynamics algorithms, the method does not require knowledge about the…

Materials Science · Physics 2007-05-23 Thomas Schwager , Thorsten Poeschel

ParticLS (\emph{Partic}le \emph{L}evel \emph{S}ets) is a software library that implements the discrete element method (DEM) and meshfree methods. ParticLS tracks the interaction between individual particles whose geometries are defined by…

Mathematical Software · Computer Science 2022-04-26 Andrew D. Davis , Brendan A. West , Nathanael J. Frisch , Devin T. O'Connor , Matthew D. Parno

Beam tracking software for accelerators typically falls into two categories: fast envelope simulations limited to linear beam optics, and slower multiparticle simulations that can model nonlinear effects. To find a middle ground between…

Accelerator Physics · Physics 2017-08-02 Ben Folsom , Emanuele Laface

Polymers are an effective test-bed for studying topological constraints in condensed matter due to a wide array of synthetically-available chain topologies. When linear and ring polymers are blended together, emergent rheological properties…

Soft Condensed Matter · Physics 2024-04-25 Daniel L. Vigil , Ting Ge , Michael Rubinstein , Thomas C. O'Connor , Gary S. Grest

Electrical analogy (Lumped method) is an easy way to model human cardiovascular system. In this paper Lumped method is used for simulating a complete model. It describes a 36-vessel model and cardiac system of human body with details that…

Medical Physics · Physics 2014-11-21 Omid Ghasemalizadeh , Mohammad Reza Mirzaee , Bahar Firoozabadi , Kamran Hassani

The rheology of dense suspensions lacks a universal description due to the involvement of a wide variety of parameters, ranging from the physical properties of solid particles to the nature of the external deformation or applied stress.…

Soft Condensed Matter · Physics 2024-10-22 Bhanu Prasad Bhowmik , Christopher Ness

We present TTCF4LAMMPS, a toolkit for performing non-equilibrium molecular dynamics (NEMD) simulations to study fluid behaviour at low shear rates using the LAMMPS software. By combining direct NEMD simulations and the transient-time…

Soft Condensed Matter · Physics 2023-12-07 Luca Maffioli , James P. Ewen , Edward R. Smith , Sleeba Varghese , Peter J. Daivis , Daniele Dini , B. D. Todd

Monte-Carlo simulation of physical processes is an important tool for detector development as it allows to predict signal pulse amplitude and timing, time resolution, efficiency ... Yet despite the fact they are very common, full…

Instrumentation and Detectors · Physics 2016-07-27 Vincent Français

A method for adaptive model order reduction for nonsmooth discrete element simulation is developed and analysed in numerical experiments. Regions of the granular media that collectively move as rigid bodies are substituted with rigid bodies…

Computational Physics · Physics 2015-12-02 Martin Servin , Da Wang

Molecular Dynamics is an important tool for computational biologists, chemists, and materials scientists, consuming a sizable amount of supercomputing resources. Many of the investigated systems contain charged particles, which can only be…

Computational Engineering, Finance, and Science · Computer Science 2017-02-15 William McDoniel , Markus Höhnerbach , Rodrigo Canales , Ahmed E. Ismail , Paolo Bientinesi

The topic of provable deep neural network robustness has raised considerable interest in recent years. Most research has focused on adversarial robustness, which studies the robustness of perceptive models in the neighbourhood of particular…

Machine Learning · Computer Science 2019-11-26 Julien Girard-Satabin , Guillaume Charpiat , Zakaria Chihani , Marc Schoenauer

Molecular dynamics (MD) has become a powerful tool for studying biophysical systems, due to increasing computational power and availability of software. Although MD has made many contributions to better understanding these complex…

Computational Physics · Physics 2019-09-27 Yihang Wang , Joao Marcelo Lamim Ribeiro , Pratyush Tiwary

Dry, wet, dense, and dilute granular flows have been previously considered fundamentally different and thus described by distinct, and in many cases incompatible, rheologies. We carry out extensive simulations of granular flows, including…

Soft Condensed Matter · Physics 2019-09-17 Thomas Pähtz , Orencio Durán , David N. de Klerk , Indresan Govender , Martin Trulsson

An accurate prediction of the translational and rotational motion of particles suspended in a fluid is only possible if a complete set of correlations for the force coefficients of fluid-particle interaction is known. The present study is…

Fluid Dynamics · Physics 2020-09-24 Martyna Minakowska , Thomas Richter , Sebastian Sager

A computer simulation has to be fast to be helpful, if it is employed to study the behavior of a multicomponent dynamic system. This paper discusses modeling concepts and algorithmic techniques useful for creating such fast simulations.…

Data Structures and Algorithms · Computer Science 2007-05-23 Boris D. Lubachevsky