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Shape is one of the important characteristics for the structures observed in living organisms. Whereas biologists have proposed models where the shape is controlled on a molecular level [1], physicists, following Turing [2] and d'Arcy…

Tissues and Organs · Quantitative Biology 2010-10-11 Etienne Couturier , Sylvain Courrech du Pont , Stephane Douady

We show a new simple algorithm that checks whether a given higher-order grammar generates a nonempty language of trees. The algorithm amounts to a procedure that transforms a grammar of order n to a grammar of order n-1, preserving…

Formal Languages and Automata Theory · Computer Science 2020-09-18 Paweł Parys

We study rooted planar random trees with a probability distribution which is proportional to a product of weight factors $w_n$ associated to the vertices of the tree and depending only on their individual degrees $n$. We focus on the case…

Mathematical Physics · Physics 2015-05-27 Svante Janson , Thordur Jonsson , Sigurdur Orn Stefansson

Decision trees are widely used for classification and regression tasks in a variety of application fields due to their interpretability and good accuracy. During the past decade, growing attention has been devoted to globally optimized…

Machine Learning · Computer Science 2025-01-28 Antonio Consolo , Edoardo Amaldi , Andrea Manno

Certain families of combinatorial objects admit recursive descriptions in terms of generating trees: each node of the tree corresponds to an object, and the branch leading to the node encodes the choices made in the construction of the…

The Rooted Maximum Leaf Outbranching problem consists in finding a spanning directed tree rooted at some prescribed vertex of a digraph with the maximum number of leaves. Its parameterized version asks if there exists such a tree with at…

Discrete Mathematics · Computer Science 2009-04-20 Jean Daligault , Stephan Thomasse

A non-local model describing the growth of a tree-like transportation network with given allocation rules is proposed. In this model we focus on tree like networks, and the network transports the very resource it needs to build itself. Some…

Adaptation and Self-Organizing Systems · Physics 2019-07-24 Olivier Bui , Xavier Leoncini

The Yule process generates a class of binary trees which is fundamental to population genetic models and other applications in evolutionary biology. In this paper, we introduce a family of sub-classes of ranked trees, called Omega-trees,…

Populations and Evolution · Quantitative Biology 2013-08-14 Filippo Disanto , Anna Schlizio , Thomas Wiehe

In this paper we continue the study of permutations avoiding the vincular pattern $1-32-4$ by constructing a generating tree with a single label for these permutations. This construction finally provides a clearer explanation of why a…

Combinatorics · Mathematics 2021-03-02 Matteo Cervetti

Conditional graph generation tasks involve training a model to generate a graph given a set of input conditions. Many previous studies employ autoregressive models to incrementally generate graph components such as nodes and edges. However,…

Machine Learning · Computer Science 2023-05-26 Jie Bu , Kazi Sajeed Mehrab , Anuj Karpatne

We present a constraint model for the problem of producing a tree decomposition of a graph. The inputs to the model are a simple graph G, the number of nodes in the desired tree decomposition and the maximum cardinality of each node in that…

Discrete Mathematics · Computer Science 2019-08-08 Benjamin Bumpus , Patrick Prosser , James Trimble

We study the problem of sharing as many branching conditions of a given forest classifier or regressor as possible while keeping classification performance. As a constraint for preventing from accuracy degradation, we first consider the one…

Machine Learning · Computer Science 2022-12-15 Atsuyoshi Nakamura , Kento Sakurada

We consider the process of uncovering the vertices of a random labeled tree according to their labels. First, a labeled tree with $n$ vertices is generated uniformly at random. Thereafter, the vertices are uncovered one by one, in order of…

Probability · Mathematics 2023-01-03 Benjamin Hackl , Alois Panholzer , Stephan Wagner

Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…

Populations and Evolution · Quantitative Biology 2021-06-30 Thomas Wiehe

We study stochastic processes that generate non-growing complex networks without self-loops and multiple edges (simple graphs). The work concentrates on understanding and formulation of constraints which keep the rewiring stochastic…

Physics and Society · Physics 2009-07-10 Tomas Hruz , Michal Natora , Madhuresh Agrawal

Although regression trees were originally designed for large datasets, they can profitably be used on small datasets as well, including those from replicated or unreplicated complete factorial experiments. We show that in the latter…

Statistics Theory · Mathematics 2007-06-13 Wei-Yin Loh

In this note we analyze the performance of a simple root-finding algorithm in uniform attachment trees. The leaf-stripping algorithm recursively removes all leaves of the tree for a carefully chosen number of rounds. We show that, with…

Probability · Mathematics 2024-10-10 Louigi Addario-Berry , Anna Brandenberger , Simon Briend , Nicolas Broutin , Gábor Lugosi

It is known that the size of the largest common subtree (i.e., the maximum agreement subtree) of two independent random binary trees with $n$ given labeled leaves is of order between $n^{0.366}$ and $n^{1/2}$. We improve the lower bound to…

Probability · Mathematics 2023-02-06 Ali Khezeli

Recently proposed budding tree is a decision tree algorithm in which every node is part internal node and part leaf. This allows representing every decision tree in a continuous parameter space, and therefore a budding tree can be jointly…

Machine Learning · Computer Science 2014-12-22 Ozan İrsoy , Ethem Alpaydın

We study random trees which are invariant in law under the operation of contracting each edge independently with probability $p\in(0,1)$. We show that all such trees can be constructed through Poissonian sampling from a certain class of…

Probability · Mathematics 2018-06-20 Olivier Hénard , Pascal Maillard