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Graph neural networks (GNNs) have exhibited exceptional efficacy in a diverse array of applications. However, the sheer size of large-scale graphs presents a significant challenge to real-time inference with GNNs. Although existing Scalable…

Machine Learning · Computer Science 2023-12-13 Xinyi Gao , Wentao Zhang , Junliang Yu , Yingxia Shao , Quoc Viet Hung Nguyen , Bin Cui , Hongzhi Yin

Protein function prediction is a crucial task in bioinformatics, with significant implications for understanding biological processes and disease mechanisms. While the relationship between sequence and function has been extensively…

Quantitative Methods · Quantitative Biology 2024-09-04 Shania Mitra , Lei Huang , Manolis Kellis

Computer-aided diagnosis has become a necessity for accurate and immediate coronavirus disease 2019 (COVID-19) detection to aid treatment and prevent the spread of the virus. Numerous studies have proposed to use Deep Learning techniques…

Image and Video Processing · Electrical Eng. & Systems 2025-01-27 Aysen Degerli , Mete Ahishali , Mehmet Yamac , Serkan Kiranyaz , Muhammad E. H. Chowdhury , Khalid Hameed , Tahir Hamid , Rashid Mazhar , Moncef Gabbouj

Graph Neural Networks (GNNs) have been shown to possess strong representation abilities over graph data. However, GNNs are vulnerable to adversarial attacks, and even minor perturbations to the graph structure can significantly degrade…

Machine Learning · Computer Science 2023-09-20 Abdullah Alchihabi , Qing En , Yuhong Guo

Until now, Coronavirus SARS-CoV-2 has caused more than 850,000 deaths and infected more than 27 million individuals in over 120 countries. Besides principal polymerase chain reaction (PCR) tests, automatically identifying positive samples…

Image and Video Processing · Electrical Eng. & Systems 2020-12-02 Duy M. H. Nguyen , Duy M. Nguyen , Huong Vu , Binh T. Nguyen , Fabrizio Nunnari , Daniel Sonntag

The application of graph neural networks (GNNs) to the domain of electrical power grids has high potential impact on smart grid monitoring. Even though there is a natural correspondence of power flow to message-passing in GNNs, their…

With the spread of COVID-19 around the globe over the past year, the usage of artificial intelligence (AI) algorithms and image processing methods to analyze the X-ray images of patients' chest with COVID-19 has become essential. The…

Image and Video Processing · Electrical Eng. & Systems 2025-01-16 Xinyuan Song

Locating the source of an epidemic, or patient zero (P0), can provide critical insights into the infection's transmission course and allow efficient resource allocation. Existing methods use graph-theoretic centrality measures and expensive…

Social and Information Networks · Computer Science 2020-06-30 Chintan Shah , Nima Dehmamy , Nicola Perra , Matteo Chinazzi , Albert-László Barabási , Alessandro Vespignani , Rose Yu

We introduce EINNs, a framework crafted for epidemic forecasting that builds upon the theoretical grounds provided by mechanistic models as well as the data-driven expressibility afforded by AI models, and their capabilities to ingest…

Machine Learning · Computer Science 2023-01-12 Alexander Rodríguez , Jiaming Cui , Naren Ramakrishnan , Bijaya Adhikari , B. Aditya Prakash

Message-passing graph neural networks (MPNNs) emerged as powerful tools for processing graph-structured input. However, they operate on a fixed input graph structure, ignoring potential noise and missing information. Furthermore, their…

Machine Learning · Computer Science 2024-03-27 Chendi Qian , Andrei Manolache , Kareem Ahmed , Zhe Zeng , Guy Van den Broeck , Mathias Niepert , Christopher Morris

Graph processes exhibit a temporal structure determined by the sequence index and and a spatial structure determined by the graph support. To learn from graph processes, an information processing architecture must then be able to exploit…

Signal Processing · Electrical Eng. & Systems 2020-12-02 Luana Ruiz , Fernando Gama , Alejandro Ribeiro

Graph Neural Networks (GNNs) are powerful machine learning prediction models on graph-structured data. However, GNNs lack rigorous uncertainty estimates, limiting their reliable deployment in settings where the cost of errors is…

Machine Learning · Computer Science 2023-11-01 Kexin Huang , Ying Jin , Emmanuel Candès , Jure Leskovec

Among various spatio-temporal prediction tasks, epidemic forecasting plays a critical role in public health management. Recent studies have demonstrated the strong potential of spatio-temporal graph neural networks (STGNNs) in extracting…

Machine Learning · Computer Science 2025-12-30 Yufan Zheng , Wei Jiang , Tong Chen , Alexander Zhou , Nguyen Quoc Viet Hung , Choujun Zhan , Hongzhi Yin

Graph Neural Networks (GNNs) have garnered significant attention from researchers due to their outstanding performance in handling graph-related tasks, such as social network analysis, protein design, and so on. Despite their widespread…

Cryptography and Security · Computer Science 2025-01-03 Xiao Lin , Mingjie Li , Yisen Wang

Countries around the world implement nonpharmaceutical interventions (NPIs) to mitigate the spread of COVID-19. Design of efficient NPIs requires identification of the structure of the disease transmission network. We here identify the key…

Populations and Evolution · Quantitative Biology 2021-05-18 Simon Syga , Diana David-Rus , Yannik Schälte , Michael Meyer-Hermann , Haralampos Hatzikirou , Andreas Deutsch

Interconnected complex systems usually undergo disruptions due to internal uncertainties and external negative impacts such as those caused by harsh operating environments or regional natural disaster events. To maintain the operation of…

Machine Learning · Computer Science 2022-07-05 Jiaxin Wu , Pingfeng Wang

Given its wide-ranging and long-lasting impacts, COVID-19, especially its spatial spreading dynamics has received much attention. Knowledge of such dynamics helps public health professionals and city managers devise and deploy efficient…

Social and Information Networks · Computer Science 2022-10-04 Jiali Zhou , Zhan Zhao , Jiangping Zhou

Do convolutional networks really need a fixed feed-forward structure? What if, after identifying the high-level concept of an image, a network could move directly to a layer that can distinguish fine-grained differences? Currently, a…

Computer Vision and Pattern Recognition · Computer Science 2020-05-12 Andreas Veit , Serge Belongie

If we can lower the number of people needed to vaccinate for a community to be immune against contagious diseases, we can save resources and life. A key to reach such a lower threshold of immunization is to find and vaccinate people who,…

Populations and Evolution · Quantitative Biology 2012-10-10 Sungmin Lee , Luis E. C. Rocha , Fredrik Liljeros , Petter Holme

Severe acute respiratory disease SARS-CoV-2 has had a found impact on public health systems and healthcare emergency response especially with respect to making decisions on the most effective measures to be taken at any given time. As…

Machine Learning · Computer Science 2023-09-19 Charithea Stylianides , Kleanthis Malialis , Panayiotis Kolios