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The integration of Large Language Models (LLMs) into biomedical research offers new opportunities for domainspecific reasoning and knowledge representation. However, their performance depends heavily on the semantic quality of training…
Event extraction (EE) is a crucial information extraction task that aims to extract event information in texts. Most existing methods assume that events appear in sentences without overlaps, which are not applicable to the complicated…
Extracting cause-effect entities from medical literature is an important task in medical information retrieval. A solution for solving this task can be used for compilation of various causality relations, such as, causality between disease…
Entity and relation extraction is a key task in information extraction, where the output can be used for downstream NLP tasks. Existing approaches for entity and relation extraction tasks mainly focus on the English corpora and ignore other…
Relation Extraction is an important task in Information Extraction which deals with identifying semantic relations between entity mentions. Traditionally, relation extraction is carried out after entity extraction in a "pipeline" fashion,…
Information Retriever (IR) aims to find the relevant documents (e.g. snippets, passages, and articles) to a given query at large scale. IR plays an important role in many tasks such as open domain question answering and dialogue systems,…
Information extraction (IE) aims to extract complex structured information from the text. Numerous datasets have been constructed for various IE tasks, leading to time-consuming and labor-intensive data annotations. Nevertheless, most…
Automatic extraction of cause-effect relationships from natural language texts is a challenging open problem in Artificial Intelligence. Most of the early attempts at its solution used manually constructed linguistic and syntactic rules on…
While traditional systems for Open Information Extraction were statistical and rule-based, recently neural models have been introduced for the task. Our work builds upon CopyAttention, a sequence generation OpenIE model (Cui et. al., 2018).…
Information Extraction (IE) aims to automatically generate a large knowledge base from natural language text, but progress remains slow. Supervised learning requires copious human annotation, while unsupervised and weakly supervised…
Question Answer (QA) systems for biomedical experiments facilitate cross-disciplinary communication, and serve as a foundation for downstream tasks, e.g., laboratory automation. High Information Density (HID) and Multi-Step Reasoning (MSR)…
Intrinsic evaluations of OIE systems are carried out either manually -- with human evaluators judging the correctness of extractions -- or automatically, on standardized benchmarks. The latter, while much more cost-effective, is less…
To a good extent, words can be understood as corresponding to patterns or categories that appeared in order to represent concepts and structures that are particularly important or useful in a given time and space. Words are characterized by…
In the past year, large (>100B parameter) mixture-of-expert (MoE) models have become increasingly common in the open domain. While their advantages are often framed in terms of efficiency, prior work has also explored functional…
The paper presents a data-driven approach to information extraction (viewed as template filling) using the structured language model (SLM) as a statistical parser. The task of template filling is cast as constrained parsing using the SLM.…
One of the biggest bottlenecks in building accurate, high coverage neural open IE systems is the need for large labelled corpora. The diversity of open domain corpora and the variety of natural language expressions further exacerbate this…
Information seeking is an essential step for open-domain question answering to efficiently gather evidence from a large corpus. Recently, iterative approaches have been proven to be effective for complex questions, by recursively retrieving…
Open Information Extraction (OpenIE) methods extract (noun phrase, relation phrase, noun phrase) triples from text, resulting in the construction of large Open Knowledge Bases (Open KBs). The noun phrases (NPs) and relation phrases in such…
This paper addresses the problem of extracting keyphrases from scientific articles and categorizing them as corresponding to a task, process, or material. We cast the problem as sequence tagging and introduce semi-supervised methods to a…
Previous studies in Open Information Extraction (Open IE) are mainly based on extraction patterns. They manually define patterns or automatically learn them from a large corpus. However, these approaches are limited when grasping the…