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A central and long-standing issue in evolutionary theory is the origin of the biological variation upon which natural selection acts1. Some hypotheses suggest that evolutionary change represents an adaptation to the surrounding environment…

Statistical Mechanics · Physics 2007-05-23 J. Podani , Z. N. Oltvai , H. Jeong , B. Tombor , A. -L. Barabasi , E. Szathmary

We analyse the motion of a system of particles subjected a random force fluctuating in both space and time, and experiencing viscous damping. When the damping exceeds a certain threshold, the system undergoes a phase transition: the…

Disordered Systems and Neural Networks · Physics 2009-11-10 M. Wilkinson , B. Mehlig

We point out that a non-overlapping well (at negative energies) adjacent to a finite barrier (at positive energies) is a simple potential which is generally missed out while discussing the one-dimensional potentials in the textbooks of…

Quantum Physics · Physics 2011-09-28 Zafar Ahmed

The thermal activation process by which a system passes from one local energy minimum to another is a recurring motif in physics, chemistry, and biology. For instance, biopolymer chains are typically modeled in terms of energy landscapes,…

Statistical Mechanics · Physics 2024-10-01 Sudeep Adhikari , K. S. D. Beach

We model the disassembly of an excited nuclear system formed as a result of a heavy ion collision. We find that, as the beam energy in central collisions in varied, the dissociating system crosses a liquid-gas coexistence curve, resulting…

Nuclear Theory · Physics 2009-10-30 J. Pan , S. Das Gupta , M. Grant

The time dependent density matrix of a system with potential barrier is studied using path integrals. The characterization of the initial state, which is assumed to be restricted to one side of the barrier, and the time evolution of the…

Statistical Mechanics · Physics 2009-10-31 Joachim Ankerhold , Hermann Grabert

When a chemical reaction is driven by an external field, the transition state that the system must pass through as it changes from reactant to product -for example, an energy barrier- becomes time-dependent. We show that for periodic…

Chemical Physics · Physics 2015-05-01 Galen T. Craven , Thomas Bartsch , Rigoberto Hernandez

We consider continuous time random walks (CTRW) for open systems that exchange energy and matter with multiple reservoirs. Each waiting time distribution (WTD) for times between steps is characterized by a positive parameter a, which is set…

Statistical Mechanics · Physics 2010-03-01 Massimiliano Esposito , Katja Lindenberg

In ecology, prey switching refers to a predator's adaptive change of habitat or diet in response to prey abundance. In this paper, we study piecewise-smooth models of predator-prey interactions with a linear trade-off in a predator's prey…

Populations and Evolution · Quantitative Biology 2016-10-26 S. H. Piltz , M. A. Porter , P. K. Maini

We study the dynamics of flow-networks in porous media using a pore-network model. First, we consider a class of erosion dynamics assuming a constitutive law depending on flow rate, local velocities, or shear stress at the walls. We show…

Fluid Dynamics · Physics 2022-06-22 Ahmad Zareei , Deng Pan , Ariel Amir

In this paper we investigate networks whose evolution is governed by the interaction of a random assembly process and an optimization process. In the first process, new nodes are added one at a time and form connections to randomly selected…

Disordered Systems and Neural Networks · Physics 2011-05-16 Markus Brede

We consider the stochastic evolution of a (1 + 1)-dimensional polymer in the depinned regime. At equilibrium the system exhibits a double well structure: the polymer lies(essentially) either above or below the repulsive line. As a…

We consider classical hard-core particles moving on two parallel chains in the same direction. An interaction between the channels is included via the hopping rates. For a ring, the stationary state has a product form. For the case of…

Statistical Mechanics · Physics 2011-07-13 Vladislav Popkov , Ingo Peschel

Shape transformations in driven and damped molecular chains are considered. Closed chains of weakly coupled molecular subunits under the action of spatially homogeneous time-periodic external field are studied. The coupling between the…

Pattern Formation and Solitons · Physics 2016-07-01 Yuri B. Gaididei , Juan F. R. Archilla , Víctor J. Sánchez-Morcillo , Carlos Gorria

A particle subject to successive, random displacements is said to execute a random walk (in position or some other coordinate). The mathematical properties of random walks have been very thoroughly investigated, and the model is used in…

Statistical Mechanics · Physics 2007-05-23 M. Wilkinson , B. Mehlig

If a system is at thermodynamic equilibrium, an observer cannot tell whether a film of it is being played forward or in reverse: any transition will occur with the same frequency in the forward as in the reverse direction. However, if…

Statistical Mechanics · Physics 2020-07-01 John W. Biddle , Jeremy Gunawardena

Random walks on multidimensional nonlinear landscapes are of interest in many areas of science and engineering. In particular, properties of adaptive trajectories on fitness landscapes determine population fates and thus play a central role…

Populations and Evolution · Quantitative Biology 2014-10-08 Michael Manhart , Alexandre V. Morozov

The aim of this paper is to understand the tendency to organization of the turbulence in two-dimensional ideal fluids. We show that nonlinear processes as inverse cascade of the energy and vorticity concentration are essentially determined…

Fluid Dynamics · Physics 2016-01-20 M. Vlad , F. Spineanu

The dynamics of a few ultra-cold bosons tunneling from a one-dimensional potential well into open space is studied. In such a system several decay channels can be distinguished, each corresponding to a different number of bosons escaping…

Quantum Gases · Physics 2018-08-03 Jacek Dobrzyniecki , Tomasz Sowiński

Previous work on solute transport with sorption in Poiseuille flow has reached contradictory conclusions. Some have concluded that sorption increases mean solute transport velocity and decreases dispersion relative to a tracer, while others…

Fluid Dynamics · Physics 2019-09-20 Li Zhang , Marc Hesse , Moran Wang