Related papers: Near-Optimal Average-Case Approximate Trace Recons…
Edit distance similarity search, also called approximate pattern matching, is a fundamental problem with widespread database applications. The goal of the problem is to preprocess $n$ strings of length $d$, to quickly answer queries $q$ of…
We study the Inexact Restoration framework with random models for minimizing functions whose evaluation is subject to errors. We propose a constrained formulation that includes well-known stochastic problems and an algorithm applicable when…
We show that approximating the trace norm contraction coefficient of a quantum channel within a constant factor is NP-hard. Equivalently, this shows that determining the optimal success probability for encoding a bit in a quantum system…
The fully-connected tensor network (FCTN) decomposition has gained prominence in the field of tensor completion owing to its powerful capacity to capture the low-rank characteristics of tensors. Nevertheless, the recovery of local details…
Minimum storage regenerating codes have minimum storage of data in each node and therefore are maximal distance separable (MDS for short) codes. Thus, the number of nodes is upper bounded by $2^{\fb}$, where $\fb$ is the bits of data stored…
Consider a continuous signal that cannot be observed directly. Instead, one has access to multiple corrupted versions of the signal. The available corrupted signals are correlated because they carry information about the common remote…
In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…
We establish nearly optimal upper and lower bounds for approximating decision tree splits in data streams. For regression with labels in the range $\{0,1,\ldots,M\}$, we give a one-pass algorithm using $\tilde{O}(M^2/\epsilon)$ space that…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…
The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…
We consider the problem of counting the copies of a length-$k$ pattern $\sigma$ in a sequence $f \colon [n] \to \mathbb{R}$, where a copy is a subset of indices $i_1 < \ldots < i_k \in [n]$ such that $f(i_j) < f(i_\ell)$ if and only if…
Given natural limitations on the length DNA sequences, designing phylogenetic reconstruction methods which are reliable under limited information is a crucial endeavor. There have been two approaches to this problem: reconstructing partial…
Let $G$ be an $n$-node and $m$-edge positively real-weighted undirected graph. For any given integer $f \ge 1$, we study the problem of designing a sparse \emph{f-edge-fault-tolerant} ($f$-EFT) $\sigma${\em -approximate single-source…
We present novel randomized approximation schemes for the Edit Distance (ED) problem and the Longest Common Subsequence (LCS) problem that, for any constant $\epsilon>0$, compute a $(1+\epsilon)$-approximation for ED and a…
Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for both unique string…
Given an edge-colored graph, the goal of the proportional fair matching problem is to find a maximum weight matching while ensuring proportional representation (with respect to the number of edges) of each color. The colors may correspond…
The retrieval problem is the problem of associating data with keys in a set. Formally, the data structure must store a function f: U ->{0,1}^r that has specified values on the elements of a given set S, a subset of U, |S|=n, but may have…
Learning non-linear systems from noisy, limited, and/or dependent data is an important task across various scientific fields including statistics, engineering, computer science, mathematics, and many more. In general, this learning task is…
We study approximation algorithms for the following three string measures that are widely used in practice: edit distance (ED), longest common subsequence (LCS), and longest increasing sequence (LIS). All three problems can be solved…
A novel approach is put forth that utilizes data similarity, quantified on a graph, to improve upon the reconstruction performance of principal component analysis. The tasks of data dimensionality reduction and reconstruction are formulated…