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With the rise of electronic data, particularly Earth observation data, data-based geospatial modelling using machine learning (ML) has gained popularity in environmental research. Accurate geospatial predictions are vital for domain…

Machine Learning · Computer Science 2023-11-21 Diana Koldasbayeva , Polina Tregubova , Mikhail Gasanov , Alexey Zaytsev , Anna Petrovskaia , Evgeny Burnaev

A challenge in global change biology is to predict how species will respond to future environmental change and to manage these responses. To make such predictions and management actions robust to novel futures, we need to accurately…

The difficulty to measure or predict species community composition at fine spatio-temporal resolution and over large spatial scales severely hampers our ability to understand species assemblages and take appropriate conservation measures.…

Ecology and evolution are inseparable. Motivated by some recent experiments, we have developed models of evolutionary ecology from the perspective of dynamic networks. In these models, in addition to the intra-node dynamics, which…

Populations and Evolution · Quantitative Biology 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

Ecologists have long suspected that species are more likely to interact if their traits match in a particular way. For example, a pollination interaction may be more likely if the proportions of a bee's tongue fit a plant's flower shape.…

Populations and Evolution · Quantitative Biology 2019-11-05 Maximilian Pichler , Virginie Boreux , Alexandra-Maria Klein , Matthias Schleuning , Florian Hartig

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional methods frequently struggle with the inherent complexity,…

Machine Learning · Computer Science 2025-03-06 Runlong Yu , Shengyu Chen , Yiqun Xie , Xiaowei Jia

In ecology we may find scenarios where the same phenomenon (species occurrence, species abundance, etc.) is observed using two different types of samplers. For instance, species data can be collected from scientific sampling with a…

Ecosystems are governed by dynamic processes such as competition for resources, reproduction and dispersal. These shape their biodiversity and how the system responds to change. Current approaches to modelling ecosystems, especially plants,…

Quantitative Methods · Quantitative Biology 2023-03-15 Claire L. Harris , Neil Brummitt , Christina A. Cobbold , Richard Reeve

A robotic swarm that is required to operate for long periods in a potentially unknown environment can use both evolution and individual learning methods in order to adapt. However, the role played by the environment in influencing the…

Neural and Evolutionary Computing · Computer Science 2018-04-23 Andreas Steyven , Emma Hart , Ben Paechter

Determining spatial distributions of species and communities are key objectives of ecology and conservation. Joint species distribution models use multi-species detection-nondetection data to estimate species and community distributions.…

Applications · Statistics 2022-12-15 Jeffrey W. Doser , Andrew O. Finley , Sudipto Banerjee

To effectively monitor biodiversity in streams and rivers, we need to quantify species distribution accurately. Occupancy models are useful for distinguishing between the non-detection of a species and its actual absence. While these models…

Applications · Statistics 2024-09-17 Olivier Gimenez

Ecologists are interested in modeling the population growth of species in various ecosystems. Studying population dynamics can assist environmental managers in making better decisions for the environment. Traditionally, the sampling of…

Methodology · Statistics 2021-02-04 Rebecca E. Atanga , Edward L. Boone , Ryad A. Ghanam , Ben Stewart-Koster

Accurate predictions and representations of plant growth patterns in simulated and controlled environments are important for addressing various challenges in plant phenomics research. This review explores various works on state-of-the-art…

Quantitative Methods · Quantitative Biology 2025-07-17 Mohamed Debbagh , Shangpeng Sun , Mark Lefsrud

Recently, computational modelling became a very important research tool that enables us to study problems that for decades evaded scientific analysis. Evolutionary systems are certainly examples of such problems: they are composed of many…

Populations and Evolution · Quantitative Biology 2009-07-04 Adam Lipowski , Dorota Lipowska

Due to their high predictive performance and flexibility, machine learning models are an appropriate and efficient tool for ecologists. However, implementing a machine learning model is not yet a trivial task and may seem intimidating to…

Populations and Evolution · Quantitative Biology 2023-05-29 Marine Desprez , Vincent Miele , Olivier Gimenez

Climate change is accelerating the frequency and severity of unprecedented events, deviating from established patterns. Predicting these out-of-distribution (OOD) events is critical for assessing risks and guiding climate adaptation. While…

Machine Learning · Computer Science 2025-09-16 Maria Conchita Agana Navarro , Geng Li , Theo Wolf , María Pérez-Ortiz

Mathematical modelling of the evolution of the size-spectrum dynamics in aquatic ecosystems was discovered to be a powerful tool to have a deeper insight into impacts of human- and environmental driven changes on the marine ecosystem. In…

Analysis of PDEs · Mathematics 2024-01-02 Laura Kanzler , Benoit Perthame , Benoit Sarels

Ecological systems are governed by complex interactions which are mainly nonlinear. In order to capture this complexity and nonlinearity, statistical models recently gained popularity. However, although these models are commonly applied in…

Quantitative Methods · Quantitative Biology 2011-07-29 Can Ozan Tan , Uygar Ozesmi , Meryem Beklioglu , Esra Per , Bahtiyar Kurt

This paper presents an exploratory study that harnesses the capabilities of large language models (LLMs) to mine key ecological entities from invasion biology literature. Specifically, we focus on extracting species names, their locations,…

Computation and Language · Computer Science 2025-01-31 Jennifer D'Souza , Zachary Laubach , Tarek Al Mustafa , Sina Zarrieß , Robert Frühstückl , Phyllis Illari

Mapping the spatial distribution of species is essential for conservation policy and invasive species management. Species distribution models (SDMs) are the primary tools for this task, serving two purposes: achieving robust predictive…

Computer Vision and Pattern Recognition · Computer Science 2026-04-16 Augustin de la Brosse , Damien Garreau , Thomas Houet , Thomas Corpetti