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Diagnosing Brain Tumor with the aid of Magnetic Resonance Imaging (MRI) has gained enormous prominence over the years, primarily in the field of medical science. Detection and/or partitioning of brain tumors solely with the aid of MR…

Image and Video Processing · Electrical Eng. & Systems 2020-11-19 Md. Abu Bakr Siddique , Shadman Sakib , Mohammad Mahmudur Rahman Khan , Abyaz Kader Tanzeem , Madiha Chowdhury , Nowrin Yasmin

Often in medical imaging, it is prohibitively challenging to produce enough boundary annotations to train deep neural networks for accurate tumor segmentation. We propose the use of weak labels about whether an image presents tumor or…

Computer Vision and Pattern Recognition · Computer Science 2021-06-15 Eugene Vorontsov , Pavlo Molchanov , Christopher Beckham , Jan Kautz , Samuel Kadoury

During cancer progression, malignant cells accumulate somatic mutations that can lead to genetic aberrations. In particular, evolutionary events akin to segmental duplications or deletions can alter the copy-number profile (CNP) of a set of…

Genomics · Quantitative Biology 2020-02-27 Garance Cordonnier , Manuel Lafond

Data augmentation is essential to achieve state-of-the-art performance in many deep learning applications. However, the most effective augmentation techniques become computationally prohibitive for even medium-sized datasets. To address…

Machine Learning · Computer Science 2023-07-21 Tian Yu Liu , Baharan Mirzasoleiman

In the past few years, deep learning (DL) models have drawn great attention and shown superior performance on brain tumor and subregion segmentation tasks. However, the success is limited to segmentation of adult gliomas, where sufficient…

Image and Video Processing · Electrical Eng. & Systems 2021-10-01 Silu Zhang , Angela Edwards , Shubo Wang , Zoltan Patay , Asim Bag , Matthew A. Scoggins

Medical image registration is a critical task that estimates the spatial correspondence between pairs of images. However, current traditional and deep-learning-based methods rely on similarity measures to generate a deforming field, which…

Image and Video Processing · Electrical Eng. & Systems 2024-05-13 Qihua Dong , Hao Du , Ying Song , Yan Xu , Jing Liao

Modeling and manufacturing of personalized cranial implants are important research areas that may decrease the waiting time for patients suffering from cranial damage. The modeling of personalized implants may be partially automated by the…

Computer Vision and Pattern Recognition · Computer Science 2024-06-11 Marek Wodzinski , Kamil Kwarciak , Mateusz Daniol , Daria Hemmerling

Background: Medical images are more difficult to acquire and annotate than natural images, which results in data augmentation technologies often being used in medical image segmentation tasks. Most data augmentation technologies used in…

Computer Vision and Pattern Recognition · Computer Science 2022-10-18 Lianting Hu , Huiying Liang , Jiajie Tang , Xin Li , Li Huang , Long Lu

In the field of computational pathology, deep learning algorithms have made significant progress in tasks such as nuclei segmentation and classification. However, the potential of these advanced methods is limited by the lack of available…

Computer Vision and Pattern Recognition · Computer Science 2024-07-22 Hyun-Jic Oh , Won-Ki Jeong

Determining the primary site of origin for metastatic tumors is one of the open problems in cancer care because the efficacy of treatment often depends on the cancer tissue of origin. Classification methods that can leverage tumor genomic…

Genomics · Quantitative Biology 2019-11-19 Alena Harley

Segmenting polyps in colonoscopy images is essential for the early identification and diagnosis of colorectal cancer, a significant cause of worldwide cancer deaths. Prior deep learning based models such as Attention based variation, UNet…

Image and Video Processing · Electrical Eng. & Systems 2024-07-30 Al Mohimanul Islam , Sadia Shakiba Bhuiyan , Mysun Mashira , Md. Rayhan Ahmed , Salekul Islam , Swakkhar Shatabda

Pancreatic cancer is one of the global leading causes of cancer-related deaths. Despite the success of Deep Learning in computer-aided diagnosis and detection (CAD) methods, little attention has been paid to the detection of Pancreatic…

Computer Vision and Pattern Recognition · Computer Science 2022-08-09 Christiaan G. A. Viviers , Mark Ramaekers , Peter H. N. de With , Dimitrios Mavroeidis , Joost Nederend , Misha Luyer , Fons van der Sommen

In medical imaging, segmentation and localization of spinal tumors in three-dimensional (3D) space pose significant computational challenges, primarily stemming from limited data availability. In response, this study introduces a novel data…

Image and Video Processing · Electrical Eng. & Systems 2024-05-08 Rikathi Pal , Sudeshna Mondal , Aditi Gupta , Priya Saha , Somoballi Ghoshal , Amlan Chakrabarti , Susmita Sur-Kolay

Damage to road pavement can develop into cracks, potholes, spallings, and other issues posing significant challenges to the integrity, safety, and durability of the road structure. Detecting and monitoring the evolution of these damages is…

Computer Vision and Pattern Recognition · Computer Science 2024-07-11 Punnawat Siripathitti , Florent Forest , Olga Fink

The computer simulation of organ-scale biomechanistic models of cancer personalized via routinely collected clinical and imaging data enables to obtain patient-specific predictions of tumor growth and treatment response over the anatomy of…

This research presents an enhanced approach for precise segmentation of brain tumor masses in magnetic resonance imaging (MRI) using an advanced 3D-UNet model combined with a Context Transformer (CoT). By architectural expansion CoT, the…

Computer Vision and Pattern Recognition · Computer Science 2024-07-12 Thien-Qua T. Nguyen , Hieu-Nghia Nguyen , Thanh-Hieu Bui , Thien B. Nguyen-Tat , Vuong M. Ngo

Detection of tumors in metastatic colorectal cancer (mCRC) plays an essential role in the early diagnosis and treatment of liver cancer. Deep learning models backboned by fully convolutional neural networks (FCNNs) have become the dominant…

Image and Video Processing · Electrical Eng. & Systems 2023-09-01 Ramtin Mojtahedi , Mohammad Hamghalam , Richard K. G. Do , Amber L. Simpson

Personalized cancer modeling for clinical applications requires robust and efficient parameter calibration, particularly in settings with limited patient data. This need is especially critical for medical digital twins (MDTs), which are…

Other Quantitative Biology · Quantitative Biology 2026-05-01 Logan Rose , Jonathan Martinez , Juho Kim , Jing Qin , Boris Aguilar , David Murrugarra

While skin cancer detection has been a valuable deep learning application for years, its evaluation has often neglected the context in which testing images are assessed. Traditional melanoma classifiers assume that their testing…

Image and Video Processing · Electrical Eng. & Systems 2023-08-10 Nick DiSanto , Gavin Harding , Ethan Martinez , Benjamin Sanders

This paper addresses the task of nuclei segmentation in high-resolution histopathological images. We propose an auto- matic end-to-end deep neural network algorithm for segmenta- tion of individual nuclei. A nucleus-boundary model is…

Computer Vision and Pattern Recognition · Computer Science 2020-03-18 Yuxin Cui , Guiying Zhang , Zhonghao Liu , Zheng Xiong , Jianjun Hu