Related papers: Clinical Relation Extraction Using Transformer-bas…

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

With the explosive growth of biomedical literature, designing automatic tools to extract information from the literature has great significance in biomedical research. Recently, transformer-based BERT models adapted to the biomedical domain…

Relation extraction (RE) consists in identifying and structuring automatically relations of interest from texts. Recently, BERT improved the top performances for several NLP tasks, including RE. However, the best way to use BERT, within a…

There has been significant progress in recent years in the field of Natural Language Processing thanks to the introduction of the Transformer architecture. Current state-of-the-art models, via a large number of parameters and pre-training…

This comprehensive survey delves into the latest advancements in Relation Extraction (RE), a pivotal task in natural language processing essential for applications across biomedical, financial, and legal sectors. This study highlights the…

Background: Identifying relationships between clinical events and temporal expressions is a key challenge in meaningfully analyzing clinical text for use in advanced AI applications. While previous studies exist, the state-of-the-art…

Biomedical research is growing at such an exponential pace that scientists, researchers, and practitioners are no more able to cope with the amount of published literature in the domain. The knowledge presented in the literature needs to be…

The use of transfer learning methods is largely responsible for the present breakthrough in Natural Learning Processing (NLP) tasks across multiple domains. In order to solve the problem of sentiment detection, we examined the performance…

The Bidirectional Encoder Representations from Transformers (BERT) model has achieved the state-of-the-art performance for many natural language processing (NLP) tasks. Yet, limited research has been contributed to studying its…

This paper presents our participation in the AGAC Track from the 2019 BioNLP Open Shared Tasks. We provide a solution for Task 3, which aims to extract "gene - function change - disease" triples, where "gene" and "disease" are mentions of…

The rising prevalence of mental health disorders necessitates the development of robust, automated tools for early detection and monitoring. Recent advances in Natural Language Processing (NLP), particularly transformer-based architectures,…

State-of-the-art models for relation extraction (RE) in the biomedical domain consider finetuning BioBERT using classification, but they may suffer from the anisotropy problem. Contrastive learning methods can reduce this anisotropy…

Objective: Clinical knowledge enriched transformer models (e.g., ClinicalBERT) have state-of-the-art results on clinical NLP (natural language processing) tasks. One of the core limitations of these transformer models is the substantial…

In the era of large language model, relation extraction (RE) plays an important role in information extraction through the transformation of unstructured raw text into structured data (Wadhwa et al., 2023). In this paper, we systematically…

Backgrounds: Information extraction (IE) is critical in clinical natural language processing (NLP). While large language models (LLMs) excel on generative tasks, their performance on extractive tasks remains debated. Methods: We…

Transformers-based models, such as BERT, have dramatically improved the performance for various natural language processing tasks. The clinical knowledge enriched model, namely ClinicalBERT, also achieved state-of-the-art results when…

In recent years extracting relevant information from biomedical and clinical texts such as research articles, discharge summaries, or electronic health records have been a subject of many research efforts and shared challenges. Relation…

Speculation is a naturally occurring phenomena in textual data, forming an integral component of many systems, especially in the biomedical information retrieval domain. Previous work addressing cue detection and scope resolution (the two…

Millions of people openly share mental health struggles on social media, providing rich data for early detection of conditions such as depression, bipolar disorder, etc. However, most prior Natural Language Processing (NLP) research has…

Recent advances in neural architectures, such as the Transformer, coupled with the emergence of large-scale pre-trained models such as BERT, have revolutionized the field of Natural Language Processing (NLP), pushing the state of the art…