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When training transformers on graph-structured data, incorporating information about the underlying topology is crucial for good performance. Topological masking, a type of relative position encoding, achieves this by upweighting or…

We propose a graph-oriented attention-based explainability method for tabular data. Tasks involving tabular data have been solved mostly using traditional tree-based machine learning models which have the challenges of feature selection and…

Machine Learning · Computer Science 2024-06-05 Andrea Treviño Gavito , Diego Klabjan , Jean Utke

Transformer architecture has become ubiquitous in the natural language processing field. To interpret the Transformer-based models, their attention patterns have been extensively analyzed. However, the Transformer architecture is not only…

Computation and Language · Computer Science 2021-09-16 Goro Kobayashi , Tatsuki Kuribayashi , Sho Yokoi , Kentaro Inui

Recent studies have revealed various manifestations of position bias in transformer architectures, from the "lost-in-the-middle" phenomenon to attention sinks, yet a comprehensive theoretical understanding of how attention masks and…

Machine Learning · Computer Science 2025-08-12 Xinyi Wu , Yifei Wang , Stefanie Jegelka , Ali Jadbabaie

This work presents a modification of the self-attention dynamics proposed by Geshkovski et al. (arXiv:2312.10794) to better reflect the practically relevant, causally masked attention used in transformer architectures for generative AI.…

Machine Learning · Computer Science 2024-11-12 Nikita Karagodin , Yury Polyanskiy , Philippe Rigollet

The decoder-only Transformer architecture with causal masking and relative position encoding (RPE) has become the de facto choice in language modeling. Despite its exceptional performance across various tasks, we have identified two…

Computation and Language · Computer Science 2024-02-08 Qingyu Yin , Xuzheng He , Xiang Zhuang , Yu Zhao , Jianhua Yao , Xiaoyu Shen , Qiang Zhang

Linear attention mechanisms have emerged as efficient alternatives to full self-attention in Graph Transformers, offering linear time complexity. However, existing linear attention models often suffer from a significant drop in…

Computer Vision and Pattern Recognition · Computer Science 2026-01-29 Zhaolin Hu , Kun Li , Hehe Fan , Yi Yang

To help address the growing demand for ever-longer sequence lengths in transformer models, Liu et al. recently proposed Ring Attention, an exact attention algorithm capable of overcoming per-device memory bottle- necks by distributing…

Machine Learning · Computer Science 2023-11-17 William Brandon , Aniruddha Nrusimha , Kevin Qian , Zachary Ankner , Tian Jin , Zhiye Song , Jonathan Ragan-Kelley

Real-world graphs naturally exhibit hierarchical or cyclical structures that are unfit for the typical Euclidean space. While there exist graph neural networks that leverage hyperbolic or spherical spaces to learn representations that embed…

Machine Learning · Computer Science 2023-09-11 Sungjun Cho , Seunghyuk Cho , Sungwoo Park , Hankook Lee , Honglak Lee , Moontae Lee

There has been a recent surge in transformer-based architectures for learning on graphs, mainly motivated by attention as an effective learning mechanism and the desire to supersede handcrafted operators characteristic of message passing…

Machine Learning · Computer Science 2025-06-10 David Buterez , Jon Paul Janet , Dino Oglic , Pietro Lio

Transformers, which are state-of-the-art in most machine learning tasks, represent the data as sequences of vectors called tokens. This representation is then exploited by the attention function, which learns dependencies between tokens and…

Machine Learning · Computer Science 2025-01-31 Valérie Castin , Pierre Ablin , José Antonio Carrillo , Gabriel Peyré

Existing research largely attributes the global sequence modeling capability of Transformers to the explicit computation of attention weights, a process that inherently incurs quadratic computational complexity. In this work, we offer a…

Computer Vision and Pattern Recognition · Computer Science 2026-05-07 Ruize He , Dongchen Han , Gao Huang

Graph Transformers have garnered significant attention for learning graph-structured data, thanks to their superb ability to capture long-range dependencies among nodes. However, the quadratic space and time complexity hinders the…

Information Retrieval · Computer Science 2024-05-08 Huiyuan Chen , Zhe Xu , Chin-Chia Michael Yeh , Vivian Lai , Yan Zheng , Minghua Xu , Hanghang Tong

Motivated by the factorization inherent in the original fast multipole method and the improved fast Gauss transform we introduce a factorable form of attention that operates efficiently in high dimensions. This approach reduces the…

Machine Learning · Computer Science 2024-02-13 Armin Gerami , Monte Hoover , Pranav S. Dulepet , Ramani Duraiswami

We present an approach to modifying Transformer architectures by integrating graph-aware relational reasoning into the attention mechanism, merging concepts from graph neural networks and language modeling. Building on the inherent…

Machine Learning · Computer Science 2025-03-06 Markus J. Buehler

Flow-based generative models have shown an excellent ability to explicitly learn the probability density function of data via a sequence of invertible transformations. Yet, learning attentions in generative flows remains understudied, while…

Machine Learning · Computer Science 2022-04-01 Rhea Sanjay Sukthanker , Zhiwu Huang , Suryansh Kumar , Radu Timofte , Luc Van Gool

We train a linear attention transformer on millions of masked-block matrix completion tasks: each prompt is masked low-rank matrix whose missing block may be (i) a scalar prediction target or (ii) an unseen kernel slice of Nystr\"om…

Machine Learning · Computer Science 2025-09-25 Patrick Lutz , Aditya Gangrade , Hadi Daneshmand , Venkatesh Saligrama

Transformers have demonstrated great success in numerous domains including natural language processing and bioinformatics. This success stems from the use of the attention mechanism by these models in order to represent and propagate…

Machine Learning · Computer Science 2025-02-10 Nathaniel Tomczak , Sanmukh Kuppannagari

While the Self-Attention mechanism in the Transformer model has proven to be effective in many domains, we observe that it is less effective in more diverse settings (e.g. multimodality) due to the varying granularity of each token and the…

Computer Vision and Pattern Recognition · Computer Science 2024-06-06 Wayner Barrios , SouYoung Jin

Structured dropout approaches, such as attention dropout and DropHead, have been investigated to regularize the multi-head attention mechanism in Transformers. In this paper, we propose a new regularization scheme based on token-level…

Computation and Language · Computer Science 2023-10-31 Yangjun Wu , Kebin Fang , Dongxiang Zhang , Han Wang , Hao Zhang , Gang Chen
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