Related papers: Correlation detection in trees for planted graph a…
A tree is said to be even if for every pair of distinct leaves, the length of the unique path between them is even. In this paper we discuss the problem of determining whether an input graph has a spanning even tree. Hofmann and Walsh…
The objective of clustering is to discover natural groups in datasets and to identify geometrical structures which might reside there, without assuming any prior knowledge on the characteristics of the data. The problem can be seen as…
We consider inapproximability of the correlation clustering problem defined as follows: Given a graph $G = (V,E)$ where each edge is labeled either "+" (similar) or "-" (dissimilar), correlation clustering seeks to partition the vertices…
The complexity of the maximum common connected subgraph problem in partial $k$-trees is still not fully understood. Polynomial-time solutions are known for degree-bounded outerplanar graphs, a subclass of the partial $2$-trees. On the other…
A graph is rectilinear planar if it admits a planar orthogonal drawing without bends. While testing rectilinear planarity is NP-hard in general (Garg and Tamassia, 2001), it is a long-standing open problem to establish a tight upper bound…
Given two graphs, the graph matching problem is to align the two vertex sets so as to minimize the number of adjacency disagreements between the two graphs. The seeded graph matching problem is the graph matching problem when we are first…
We investigate a relaxation of the notion of fractional treewidth-fragility, namely fractional tree-independence-number-fragility. In particular, we obtain polynomial-time approximation schemes for meta-problems such as finding a…
The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…
Packing graphs is a combinatorial problem where several given graphs are being mapped into a common host graph such that every edge is used at most once. In the planar tree packing problem we are given two trees T1 and T2 on n vertices and…
We establish thresholds for the feasibility of random multi-graph alignment in two models. In the Gaussian model, we demonstrate an "all-or-nothing" phenomenon: above a critical threshold, exact alignment is achievable with high…
Phylogenetic inference is an intractable statistical problem on a complex space. Markov chain Monte Carlo methods are the primary tool for Bayesian phylogenetic inference but it is challenging to construct efficient schemes to explore the…
Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…
We consider the well-studied problem of finding a spanning tree with minimum average distance between vertex pairs (called a MAD tree). This is a classic network design problem which is known to be NP-hard. While approximation algorithms…
The alignment strength of a graph matching is a quantity that gives the practitioner a measure of the correlation of the two graphs, and it can also give the practitioner a sense for whether the graph matching algorithm found the true…
In this paper, we study the problem of detecting the presence of a planted perfect matching or spanning tree in an Erd\H{o}s--R\'enyi random graph. More precisely, we study the hypothesis testing problem where the statistician observes a…
We prove that a polynomial fraction of the set of $k$-component forests in the $m \times n$ grid graph have equal numbers of vertices in each component, for any constant $k$. This resolves a conjecture of Charikar, Liu, Liu, and Vuong, and…
Network alignment generalizes and unifies several approaches for forming a matching or alignment between the vertices of two graphs. We study a mathematical programming framework for network alignment problem and a sparse variation of it…
We consider combinatorial problems that can be solved in polynomial time for graphs of bounded treewidth but where the order of the polynomial that bounds the running time is expected to depend on the treewidth bound. First we review some…
Given a pair of graphs with the same number of vertices, the inexact graph matching problem consists in finding a correspondence between the vertices of these graphs that minimizes the total number of induced edge disagreements. We study…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…