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Artificial intelligence based on artificial neural networks, which are originally inspired by the biological architectures of human brain, has mostly been realized using software but executed on conventional von Neumann computers, where the…

Disordered Systems and Neural Networks · Physics 2020-01-29 Qi Zheng , Xiaorui Zhu , Yuanyuan Mi , Zhe Yuan , Ke Xia

{\it Caenorhabditis elegans} nematode worms are the only animals with the known detailed neural connectivity diagram, well characterized genomics, and relatively simple quantifiable behavioral output. With this in mind, many researchers…

Neurons and Cognition · Quantitative Biology 2019-10-17 Jan Karbowski

Motif discovery is a powerful and insightful method to quantify network structures and explore their function. As a case study, we present a comprehensive analysis of regulatory motifs in the connectome of the model organism Caenorhabditis…

Molecular Networks · Quantitative Biology 2024-09-02 Deepak Sharma , Matthias Renz , Philipp Hövel

The efficiency of recurrent neural networks (RNNs) in dealing with sequential data has long been established. However, unlike deep, and convolution networks where we can attribute the recognition of a certain feature to every layer, it is…

Machine Learning · Computer Science 2020-01-15 Stefan Horoi , Guillaume Lajoie , Guy Wolf

Animal locomotion is often subject to constraints arising from anatomical/physiological asymmetries. We use the nematode C.~elegans as a minimal model system to ask whether such constraints might shape locomotion patterns optimized during…

Neurons and Cognition · Quantitative Biology 2024-01-17 W. Mathijs Rozemuller , Steffen Werner , Antonio Carlos Costa , Liam O'Shaughnessy , Greg J. Stephens , Thomas S. Shimizu

Cerebellar-like networks, in which input activity patterns are separated by projection to a much higher-dimensional space before classification, are a recurring neurobiological motif, present in the cerebellum, dentate gyrus, insect…

Neurons and Cognition · Quantitative Biology 2026-03-23 William Dorrell , Peter E. Latham

Existing Continual Learning (CL) approaches have focused on addressing catastrophic forgetting by leveraging regularization methods, replay buffers, and task-specific components. However, realistic CL solutions must be shaped not only by…

Machine Learning · Computer Science 2023-10-11 Jinyung Hong , Theodore P. Pavlic

How to properly model graphs is a long-existing and important problem in NLP area, where several popular types of graphs are knowledge graphs, semantic graphs and dependency graphs. Comparing with other data structures, such as sequences…

Computation and Language · Computer Science 2019-07-16 Linfeng Song

Recurrent neural networks (RNNs) have shown clear superiority in sequence modeling, particularly the ones with gated units, such as long short-term memory (LSTM) and gated recurrent unit (GRU). However, the dynamic properties behind the…

Machine Learning · Computer Science 2017-02-28 Zhiyuan Tang , Ying Shi , Dong Wang , Yang Feng , Shiyue Zhang

A problem related to the development of algorithms designed to find the structure of artificial neural network used for behavioural (black-box) modelling of selected dynamic processes has been addressed in this paper. The research has…

Neural and Evolutionary Computing · Computer Science 2023-09-26 Krzysztof Laddach , Rafał Łangowski , Tomasz A. Rutkowski , Bartosz Puchalski

The fields of neural computation and artificial neural networks have developed much in the last decades. Most of the works in these fields focus on implementing and/or learning discrete functions or behavior. However, technical, physical,…

Neural and Evolutionary Computing · Computer Science 2016-06-15 Frieder Stolzenburg , Florian Ruh

We present a novel recurrent neural network (RNN) based model that combines the remembering ability of unitary RNNs with the ability of gated RNNs to effectively forget redundant/irrelevant information in its memory. We achieve this by…

Machine Learning · Computer Science 2017-10-26 Li Jing , Caglar Gulcehre , John Peurifoy , Yichen Shen , Max Tegmark , Marin Soljačić , Yoshua Bengio

Sequential activation of neurons is a common feature of network activity during a variety of behaviors, including working memory and decision making. Previous network models for sequences and memory emphasized specialized architectures in…

Neurons and Cognition · Quantitative Biology 2016-03-16 Kanaka Rajan , Christopher D Harvey , David W Tank

We address the efficiency issue for the construction of a deep graph neural network (GNN). The approach exploits the idea of representing each input graph as a fixed point of a dynamical system (implemented through a recurrent neural…

Machine Learning · Computer Science 2019-11-21 Claudio Gallicchio , Alessio Micheli

Recurrent neural networks (RNNs) are widely used throughout neuroscience as models of local neural activity. Many properties of single RNNs are well characterized theoretically, but experimental neuroscience has moved in the direction of…

Machine Learning · Computer Science 2023-01-31 Leo Kozachkov , Michaela Ennis , Jean-Jacques Slotine

This paper introduces a new neural network model that aims to mimic the biological brain more closely by structuring the network as a complete directed graph that processes continuous data for each timestep. Current neural networks have…

Neural and Evolutionary Computing · Computer Science 2024-01-10 Frank Li

Gene regulation is a dynamic process that underlies all aspects of human development, disease response, and other key biological processes. The reconstruction of temporal gene regulatory networks has conventionally relied on regression…

Quantitative Methods · Quantitative Biology 2024-10-04 Euxhen Hasanaj , Barnabás Póczos , Ziv Bar-Joseph

In neural network compression, most current methods reduce unnecessary parameters by measuring importance and redundancy. To augment already highly optimized existing solutions, we propose linearity-based compression as a novel way to…

Machine Learning · Computer Science 2025-06-27 Silas Dobler , Florian Lemmerich

The recurrent neural network and its variants have shown great success in processing sequences in recent years. However, this deep neural network has not aroused much attention in anomaly detection through predictively process monitoring.…

Machine Learning · Computer Science 2023-09-06 Jiaqi Qiu , Yu Lin , Inez Zwetsloot

Artificial neural networks which are inspired from the learning mechanism of brain have achieved great successes in many problems, especially those with deep layers. In this paper, we propose a nucleus neural network (NNN) and corresponding…

Computer Vision and Pattern Recognition · Computer Science 2019-05-15 Jia Liu , Maoguo Gong , Haibo He