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In biological cells and novel diagnostic devices biochemical receptors need to be sensitive to extremely small concentration changes of signaling molecules. The accuracy of such molecular signaling is ultimately limited by the counting…

Subcellular Processes · Quantitative Biology 2023-04-06 Aljaz Godec , Ralf Metzler

We present a quantum mechanical / molecular mechanics (QM/MM) to tackle chemical reactions with substantial molecular reorganization. For this, molecular dynamics simulations with smoothly switched interaction models are used to suggest…

Soft Condensed Matter · Physics 2020-11-06 Robert H. Meißner , Julian Konrad , Benjamin Boll , Bodo Fiedler , Dirk Zahn

Laser-cooled and trapped atomic ions form an ideal standard for the simulation of interacting quantum spin models. Effective spins are represented by appropriate internal energy levels within each ion, and the spins can be measured with…

Radical pairs and the dynamics they undergo are prevalent in many chemical and biological systems. Specifically, it has been proposed that the radical pair mechanism results from a relatively strong hyperfine interaction with its intrinsic…

Quantum Physics · Physics 2021-03-26 Amit Finkler , Durga Dasari

Understanding the mechanism of high-temperature superconductivity is among the most important problems in physics, for which quantum simulation can provide new insights. However, it remains challenging to characterize superconductivity in…

Quantum Gases · Physics 2025-09-19 Daniel K. Mark , Hong-Ye Hu , Joyce Kwan , Christian Kokail , Soonwon Choi , Susanne F. Yelin

Light enables manipulating many-body states of matter, and atoms trapped in optical lattices is a prominent example. However, quantum properties of light are completely neglected in all quantum gas experiments. Extending methods of quantum…

Physical activity (PA) is an important risk factor for many health outcomes. Wearable-devices such as accelerometers are increasingly used in biomedical studies to understand the associations between PA and health outcomes. Statistical…

Methodology · Statistics 2021-12-08 Sneha Jadhav , Carmen D. Tekwe , Yuanyuan Luan

In this paper we continue our analysis of the interplay between the pairing and the non-Fermi liquid behavior in a metal for a set of quantum-critical (QC) systems with an effective dynamical electron-electron interaction $V(\Omega_m)…

Superconductivity · Physics 2021-01-27 Yi-Ming Wu , Shang-Shun Zhang , Artem Abanov , Andrey V. Chubukov

Measurements take a singular role in quantum theory. While they are often idealized as an instantaneous process, this is in conflict with all other physical processes in nature. In this Letter, we adopt a standpoint where the interaction…

Quantum Physics · Physics 2023-11-15 Nathan Shettell , Federico Centrone , Luis Pedro García-Pintos

Fluorescent and luminescent gene reporters allow us to dynamically quantify changes in molecular species concentration over time on the single cell level. The mathematical modeling of their interaction through multivariate dynamical models…

Quantitative Methods · Quantitative Biology 2009-07-07 Michal Komorowski , Barbel Finkenstadt , Claire V. Harper , David A. Rand

High sensitivity detection plays a vital role in science discoveries and technological applications. While intriguing methods utilizing collective many-body correlations and quantum entanglements have been developed in physics to enhance…

Quantum Physics · Physics 2024-06-04 Tangyou Huang , Zhongcheng Yu , Zhongyi Ni , Xiaoji Zhou , Xiaopeng Li

Sensors that are able to detect and track single unlabelled biomolecules are an important tool both to understand biomolecular dynamics and interactions at nanoscale, and for medical diagnostics operating at their ultimate detection limits.…

Optics · Physics 2016-11-15 N. P. Mauranyapin , L. S. Madsen , M. A. Taylor , M. Waleed , W. P. Bowen

For near-term quantum devices, an important challenge is to develop efficient methods to certify that noise levels are low enough to allow potentially useful applications to be carried out. We present such a method tailored to photonic…

Quantum Physics · Physics 2022-02-11 Rawad Mezher , Shane Mansfield

Accurate prediction of binding free energies is critical to streamlining the drug development and protein design process. With the advent of GPU acceleration, absolute alchemical methods, which simulate the removal of ligand electrostatics…

Biological Physics · Physics 2021-03-17 Edward King , Ruxi Qi , Han Li , Ray Luo , Erick Aitchison

Proteins are made of atoms constantly fluctuating, but can occasionally undergo large-scale changes. Such transitions are of biological interest, linking the structure of a protein to its function with a cell. Atomic-level simulations, such…

Computational Physics · Physics 2022-10-26 Amélie Chatelain , Elena Tommasone , Laurent Daudet , Iacopo Poli

Quantum sensing exploits quantum phenomena to enhance the detection and estimation of classical parameters of physical systems and biological entities, particularly so as to overcome the inefficiencies of its classical counterparts. A…

Achieving ultimate bounds in estimation processes is the main objective of quantum metrology. In this context, several problems require measurement of multiple parameters by employing only a limited amount of resources. To this end,…

We investigate in detail a recently introduced "coherent averaging scheme" in terms of its usefulness for achieving Heisenberg limited sensitivity in the measurement of different parameters. In the scheme, $N$ quantum probes in a product…

Quantum Physics · Physics 2023-07-19 Julien M. E. Fraïsse , Daniel Braun

Non-covalent interactions are a key ingredient to determine the structure, stability, and dynamics of materials, molecules, and biological complexes. However, accurately capturing these interactions is a complex quantum many-body problem,…

Quantum Physics · Physics 2023-10-27 Matthieu Sarkis , Alessio Fallani , Alexandre Tkatchenko

Modeling and simulating the protein folding process overall remains a grand challenge in computational biology. We systematically investigate end-to-end quantum algorithms for simulating various protein dynamics with effects, such as…

Quantum Physics · Physics 2025-04-17 Zhenning Liu , Xiantao Li , Chunhao Wang , Jin-Peng Liu
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