Related papers: Polynomial delay algorithm for minimal chordal com…
We consider the problem of enumerating all minimal transversals (also called minimal hitting sets) of a hypergraph $\mathcal{H}$. An equivalent formulation of this problem known as the \emph{transversal hypergraph} problem (or…
Let H be a graph, and let C_H(G) be the number of (subgraph isomorphic) copies of H contained in a graph G. We investigate the fundamental problem of estimating C_H(G). Previous results cover only a few specific instances of this general…
We consider an incremental variant of the rooted prize-collecting Steiner-tree problem with a growing budget constraint. While no incremental solution exists that simultaneously approximates the optimum for all budgets, we show that a…
Tree decompositions were developed by Robertson and Seymour. Since then algorithms have been developed to solve intractable problems efficiently for graphs of bounded treewidth. In this paper we extend tree decompositions to allow cycles to…
It is known that problems like Vertex Cover, Feedback Vertex Set and Odd Cycle Transversal are polynomial time solvable in the class of chordal graphs. We consider these problems in a graph that has at most $k$ vertices whose deletion…
We present a new algorithm for enumerating bubbles with length constraints in directed graphs. This problem arises in transcriptomics, where the question is to identify all alternative splicing events present in a sample of mRNAs sequenced…
We present linear time {\it in-place} algorithms for several basic and fundamental graph problems including the well-known graph search methods (like depth-first search, breadth-first search, maximum cardinality search), connectivity…
As shown by Robertson and Seymour, deciding whether the complete graph $K_t$ is a minor of an input graph $G$ is a fixed parameter tractable problem when parameterized by $t$. From the approximation viewpoint, the gap to fill is quite…
We investigate the complexity of several fundamental polynomial-time solvable problems on graphs and on matrices, when the given instance has low treewidth; in the case of matrices, we consider the treewidth of the graph formed by non-zero…
We study homomorphism polynomials, which are polynomials that enumerate all homomorphisms from a pattern graph $H$ to $n$-vertex graphs. These polynomials have received a lot of attention recently for their crucial role in several new…
We give polynomial-time approximation schemes for monotone maximization problems expressible in terms of distances (up to a fixed upper bound) and efficiently solvable in graphs of bounded treewidth. These schemes apply in all fractionally…
It is known that any chordal graph on $n$ vertices can be represented as the intersection of $n$ subtrees in a tree on $n$ nodes. This fact is recently used in [2] to generate random chordal graphs on $n$ vertices by generating $n$ subtrees…
In this paper, we show the existence of a polynomial time graph isomorphism algorithm for all graphs excluding graphs that are locally trianglefree. This particular class of graphs allows to divide the graph into neighbourhood sub-graph…
Monotone trees - trees with a function defined on their vertices that decreases the further away from a root node one travels, are a natural model for a process that weakens the further one gets from its source. Given an aggregation of…
Graph alignment refers to the task of finding the vertex correspondence between two correlated graphs of $n$ vertices. Extensive study has been done on polynomial-time algorithms for the graph alignment problem under the Erd\H{o}s-R\'enyi…
A rectangular layout $\mathcal{L}$ is a rectangle partitioned into disjoint smaller rectangles so that no four smaller rectangles meet at the same point. Rectangular layouts were originally used as floorplans in VLSI design to represent…
Let $G$ be a graph having a vertex $v$ such that $H = G - v$ is a trivially perfect graph. We give a polynomial-time algorithm for the problem of deciding whether it is possible to add at most $k$ edges to $G$ to obtain a trivially perfect…
In this paper the chordal graph structures of polynomial sets appearing in triangular decomposition in top-down style are studied when the input polynomial set to decompose has a chordal associated graph. In particular, we prove that the…
In recent years, questions about the construction of special orderings of a given graph search were studied by several authors. On the one hand, the so called end-vertex problem introduced by Corneil et al. in 2010 asks for search orderings…
We introduce an NP-complete graph decision problem, the "Multi-stage graph Simple Path" (abbr. MSP) problem, which focuses on determining the existence of specific "global paths" in a graph $G$. We show that the MSP problem can be solved in…