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We present an algorithm that enumerates all the minimal triangulations of a graph in incremental polynomial time. Consequently, we get an algorithm for enumerating all the proper tree decompositions, in incremental polynomial time, where…

Data Structures and Algorithms · Computer Science 2023-07-28 Nofar Carmeli , Batya Kenig , Benny Kimelfeld , Markus Kröll

Enumerating matchings is a classical problem in the field of enumeration algorithms. There are polynomial-delay enumeration algorithms for several settings, such as enumerating perfect matchings, maximal matchings, and (weighted) matchings…

Data Structures and Algorithms · Computer Science 2022-09-07 Yasuaki Kobayashi , Kazuhiro Kurita , Kunihiro Wasa

An output-polynomial algorithm for the listing of minimal dominating sets in graphs is a challenging open problem and is known to be equivalent to the well-known Transversal problem which asks for an output-polynomial algorithm for listing…

Data Structures and Algorithms · Computer Science 2014-07-09 Mamadou Moustapha Kanté , Vincent Limouzy , Arnaud Mary , Lhouari Nourine , Takeaki Uno

The Transversal problem, i.e, the enumeration of all the minimal transversals of a hypergraph in output-polynomial time, i.e, in time polynomial in its size and the cumulated size of all its minimal transversals, is a fifty years old open…

Data Structures and Algorithms · Computer Science 2014-07-09 Mamadou Moustapha Kanté , Vincent Limouzy , Arnaud Mary , Lhouari Nourine , Takeaki Uno

Enumerating minimal dominating sets with polynomial delay in bipartite graphs is a long-standing open problem. To date, even the subcase of chordal bipartite graphs is open, with the best known algorithm due to Golovach, Heggernes, Kant\'e,…

Data Structures and Algorithms · Computer Science 2025-08-05 Emanuel Castelo , Oscar Defrain , Guilherme C. M. Gomes

In [M. M. Kant\'e, V. Limouzy, A. Mary, and L. Nourine. On the enumeration of minimal dominating sets and related notions. SIAM Journal on Discrete Mathematics, 28(4):1916-1929, 2014] the authors give an $O(n+m)$ delay algorithm based on…

Discrete Mathematics · Computer Science 2019-10-01 Oscar Defrain , Lhouari Nourine

This paper proposes a new general technique for maximal subgraph enumeration which we call proximity search, whose aim is to design efficient enumeration algorithms for problems that could not be solved by existing frameworks. To support…

Data Structures and Algorithms · Computer Science 2021-08-19 Alessio Conte , Andrea Marino , Roberto Grossi , Takeaki Uno , Luca Versari

Kimelfeld and Sagiv [Kimelfeld and Sagiv, PODS 2006], [Kimelfeld and Sagiv, Inf. Syst. 2008] pointed out the problem of enumerating $K$-fragments is of great importance in a keyword search on data graphs. In a graph-theoretic term, the…

Data Structures and Algorithms · Computer Science 2022-05-13 Yasuaki Kobayashi , Kazuhiro Kurita , Kunihiro Wasa

The linear induced matching width (LMIM-width) of a graph is a width parameter defined by using the notion of branch-decompositions of a set function on ternary trees. In this paper we study output-polynomial enumeration algorithms on…

Data Structures and Algorithms · Computer Science 2015-09-16 Petr A. Golovach , Pinar Heggernes , Mamadou Moustapha Kanté , Dieter Kratsch , Sigve H. Sæther , Yngve Villanger

In this paper, we consider the problems of enumerating minimal vertex covers and minimal dominating sets with capacity and/or connectivity constraints. We develop polynomial-delay enumeration algorithms for these problems on bounded-degree…

Data Structures and Algorithms · Computer Science 2024-11-15 Yasuaki Kobayashi , Kazuhiro Kurita , Kevin Mann , Yasuko Matsui , Hirotaka Ono

A tree decomposition of a graph facilitates computations by grouping vertices into bags that are interconnected in an acyclic structure, hence their importance in a plethora of problems such as query evaluation over databases and inference…

Data Structures and Algorithms · Computer Science 2018-10-09 Noam Ravid , Dori Medini , Benny Kimelfeld

Graph polynomials encode fundamental combinatorial invariants of graphs. Their computation is investigated using tree and path decomposition frameworks, with formal definitions of treewidth, k-trees, and pathwidth establishing the…

Discrete Mathematics · Computer Science 2025-09-29 Mehul Bafna , Shaghik Amirian

We study the problem of generating monomials of a polynomial in the context of enumeration complexity. In this setting, the complexity measure is the delay between two solutions and the total time. We present two new algorithms for…

Computational Complexity · Computer Science 2011-02-01 Yann Strozecki

We consider global problems, i.e. problems that take at least diameter time, even when the bandwidth is not restricted. We show that all problems considered admit efficient solutions in low-treewidth graphs. By ``efficient'' we mean that…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-31 Taisuke Izumi , Naoki Kitamura , Takamasa Naruse , Gregory Schwartzman

The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…

Data Structures and Algorithms · Computer Science 2016-08-23 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

For an arbitrary undirected simple graph G with m edges, we give an algorithm with running time O(m^4 |L|^2) to generate the set L of all minimal edge dominating sets of G. For bipartite graphs we obtain a better result; we show that their…

Data Structures and Algorithms · Computer Science 2012-10-24 Petr A. Golovach , Pinar Heggernes , Dieter Kratsch , Yngve Villanger

We present the first polynomial-time algorithm to exactly compute the number of labeled chordal graphs on $n$ vertices. Our algorithm solves a more general problem: given $n$ and $\omega$ as input, it computes the number of…

Data Structures and Algorithms · Computer Science 2024-10-04 Ursula Hebert-Johnson , Daniel Lokshtanov , Eric Vigoda

An algorithm is presented that solves the Minimum Dominating Set problem exactly using polynomial space based on dynamic programming for a tree decomposition. A direct application of dynamic programming based on a tree decomposition would…

Data Structures and Algorithms · Computer Science 2017-11-29 Mahdi Belbasi , Martin Fürer

Comparative analyses of phylogenetic trees typically require identical taxon sets, however, in practice, trees often include distinct but overlapping taxa. Pruning non-shared leaves discards phylogenetic signal, whereas tree completion can…

Populations and Evolution · Quantitative Biology 2026-04-28 Aleksandr Koshkarov , Nadia Tahiri

Understanding spatial correlation is vital in many fields including epidemiology and social science. Lee, Meeks and Pettersson (Stat. Comput. 2021) recently demonstrated that improved inference for areal unit count data can be achieved by…

Data Structures and Algorithms · Computer Science 2026-02-10 Jessica Enright , Duncan Lee , Kitty Meeks , William Pettersson , John Sylvester
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