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The interval graph for a set of intervals on a line consists of one vertex for each interval, and an edge for each intersecting pair of intervals. A probe interval graph is a variant that is motivated by an application to genomics, where…

Data Structures and Algorithms · Computer Science 2013-07-23 Ross M. McConnell , Yahav Nussbaum

We define persistent homology groups over any set of spaces which have inclusions defined so that the corresponding directed graph between the spaces is acyclic, as well as along any subgraph of this directed graph. This method…

Computational Geometry · Computer Science 2019-06-20 Erin Wolf Chambers , David Letscher

We present theory and practice for robust implementations of bivariate Jacobi set and Reeb space algorithms. Robustness is a fundamental topic in computational geometry that deals with the issues of numerical errors and degenerate cases in…

Computational Geometry · Computer Science 2025-10-10 Petar Hristov , Ingrid Hotz , Talha Bin Masood

Machine Learning for graphs is nowadays a research topic of consolidated relevance. Common approaches in the field typically resort to complex deep neural network architectures and demanding training algorithms, highlighting the need for…

Machine Learning · Computer Science 2020-05-12 Claudio Gallicchio , Alessio Micheli

Treewidth is a well-known graph invariant with multiple interesting applications in combinatorics. On the practical side, many NP-complete problems are polynomial-time (sometimes even linear-time) solvable on graphs of bounded treewidth. On…

Category Theory · Mathematics 2021-05-13 Zoltan A. Kocsis , Benjamin Merlin Bumpus

The intrinsic connection between lattice theory and topology is fairly well established, For instance, the collection of open subsets of a topological subspace always forms a distributive lattice. Persistent homology has been one of the…

Rings and Algebras · Mathematics 2014-02-03 Primož Škraba , João Pita Costa

It is $\mathsf{NP}$-hard to determine the minimum number of branching vertices needed in a single-source distance-preserving subgraph of an undirected graph. We show that this problem can be solved in polynomial time if the input graph is…

Data Structures and Algorithms · Computer Science 2018-10-30 Kshitij Gajjar , Jaikumar Radhakrishnan

We consider the problem of minimizing the makespan on batch processing identical machines, subject to compatibility constraints, where two jobs are compatible if they can be processed simultaneously in a same batch. These constraints are…

Discrete Mathematics · Computer Science 2023-09-07 Khaoula Bouakaz , Mourad Boudhar

We propose a consistent polynomial-time method for the unseeded node matching problem for networks with smooth underlying structures. Despite widely conjectured by the research community that the structured graph matching problem to be…

Machine Learning · Statistics 2018-08-24 Yuan Zhang

Graphs drawn in the plane are ubiquitous, arising from data sets through a variety of methods ranging from GIS analysis to image classification to shape analysis. A fundamental problem in this type of data is comparison: given a set of such…

Computational Geometry · Computer Science 2022-10-20 Levent Batakci , Abigail Branson , Bryan Castillo , Candace Todd , Erin Wolf Chambers , Elizabeth Munch

Graph embedding methods aim at finding useful graph representations by mapping nodes to a low-dimensional vector space. It is a task with important downstream applications, such as link prediction, graph reconstruction, data visualization,…

Machine Learning · Computer Science 2022-09-13 Said Kerrache , Hafida Benhidour

We develop a method to calculate the persistent currents and their spatial distribution (and transport properties) on graphs made of quasi-1D diffusive wires. They are directly related to the field derivatives of the determinant of a matrix…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 M. Pascaud , G. Montambaux

The adaptive processing of structured data is a long-standing research topic in machine learning that investigates how to automatically learn a mapping from a structured input to outputs of various nature. Recently, there has been an…

Machine Learning · Computer Science 2022-02-28 Federico Errica

The success of graph embeddings or node representation learning in a variety of downstream tasks, such as node classification, link prediction, and recommendation systems, has led to their popularity in recent years. Representation learning…

Machine Learning · Computer Science 2018-09-07 Saba A. Al-Sayouri , Danai Koutra , Evangelos E. Papalexakis , Sarah S. Lam

Path cover is a well-known intractable problem that finds a minimum number of vertex disjoint paths in a given graph to cover all the vertices. We show that a variant, where the objective function is not the number of paths but the number…

Data Structures and Algorithms · Computer Science 2018-03-09 Yinhui Cai , Guangting Chen , Yong Chen , Randy Goebel , Guohui Lin , Longcheng Liu , An Zhang

Network graphs have become a popular tool to represent complex systems composed of many interacting subunits; especially in neuroscience, network graphs are increasingly used to represent and analyze functional interactions between neural…

Information Theory · Computer Science 2015-11-24 Patricia Wollstadt , Ulrich Meyer , Michael Wibral

In this paper we focus on the map matching problem where the goal is to find a path through a planar graph such that the path through the vertices closely matches a given polygonal curve. The map matching problem is usually approached with…

Computational Geometry · Computer Science 2016-05-19 Tim Wylie , Binhai Zhu

The cell complex structure is one of the most fundamental structures in topology and combinatorics, the Morse decomposition of a dynamical system analyzes the global gradient behavior, and the Reeb graph of a function is an elementary tool…

Dynamical Systems · Mathematics 2022-05-31 Tomoo Yokoyama

It is known that for a variety of choices of metrics, including the standard bottleneck distance, the space of persistence diagrams admits geodesics. Typically these existence results produce geodesics that have the form of a convex…

Metric Geometry · Mathematics 2019-05-28 Samir Chowdhury

The goal of graph inference is to design algorithms for learning properties of a hidden graph using queries to an oracle that returns information about the graph. Graph reconstruction, verification, and property testing are all types of…

Data Structures and Algorithms · Computer Science 2025-02-26 Huck Bennett , Mitchell Black , Amir Nayyeri , Evelyn Warton