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We develop an agent-based model of vasculogenesis, the de novo formation of blood vessels. Endothelial cells in the vessel network are viewed as linearly elastic spheres and are of two types: vessel elements are contained within the…

Quantitative Methods · Quantitative Biology 2016-10-04 Holger Perfahl , Barry D Hughes , Tomas Alaracon , Philip K Maini , Mark C Lloyd , Matthias Reuss , Helen M Byrne

In comparative and developmental neuroanatomy one encounters questions regarding the deformation of neural tissue under stress. The motivation of this note is an observation (Barbas {\it et al}) that at cortical folds or gyri, the layers of…

Tissues and Organs · Quantitative Biology 2007-05-23 Partha P. Mitra

Dynamic networks are used in a variety of fields to represent the structure and evolution of the relationships between entities. We present a model which embeds longitudinal network data as trajectories in a latent Euclidean space. A Markov…

Methodology · Statistics 2020-05-19 Daniel K. Sewell , Yuguo Chen

Solid interfaces have intrinsic elasticity. However, in most experiments, this is obscured by bulk stresses. Through microscopic observations of the contact-line geometry of a partially wetting droplet on an anisotropically stretched…

Soft Condensed Matter · Physics 2017-11-29 Qin Xu , Robert W. Style , Eric R. Dufresne

The cytoskeleton of eukaryotic cells provides mechanical support and governs intracellular transport. These functions rely on the complex mechanical properties of networks of semiflexible protein filaments. Recent theoretical interest has…

Soft Condensed Matter · Physics 2012-11-01 M. Atakhorrami , G. H. Koenderink , J. F. Palierne , F. C. MacKintosh , C. F. Schmidt

This paper proposes that elastic potentials, which may be rigorously formulated using the negative Gibbs free energy or the complementary strain energy density, should be used as the basis for the plastic part of elasto-plastic constitutive…

Soft Condensed Matter · Physics 2018-06-01 Jorge Castro

The collective action of actively contractile units embedded in elastic biopolymer networks plays a crucial role in regulating the network's macroscopic mechanical response. Here, we investigate how the macroscopic boundary stress in model…

Soft Condensed Matter · Physics 2026-03-25 Abhinav Kumar , David A. Quint , Kinjal Dasbiswas

Deep continual learning requires models to adapt to new tasks without retraining from scratch. However, neural networks can lose their ability to adapt to new tasks after training on previous ones, a phenomenon known as loss of plasticity.…

Machine Learning · Computer Science 2026-05-12 Jiuqi Wang , Jayanth Srinivasa , Claire Chen , Shuze Daniel Liu , Ali Payani , Shangtong Zhang

Motivated by the empirical analysis of the air transportation system, we define a network model that includes geographical attributes along with topological and weight (traffic) properties. The introduction of geographical attributes is…

Physics and Society · Physics 2007-05-23 Alain Barrat , Marc Barthelemy , Alessandro Vespignani

Here homogenization theory is used to establish a connection between the symmetries of a periodic elastic structure associated with the microscopic properties of an elastic material and the material symmetries of the effective, macroscopic…

Mathematical Physics · Physics 2015-12-29 Mariya Ptashnyk , Brian Seguin

A variational framework is introduced to describe how a surface bends when it is subject to local constraints on its geometry. This framework is applied to describe the patterns of a folded sheet of paper. The unstretchability of paper…

Other Condensed Matter · Physics 2008-01-24 Jemal Guven , Martin Michael Mueller

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

Significant microstructural anisotropy is known to develop during shearing flow of attractive particle suspensions. These suspensions, and their capacity to form conductive networks, play a key role in flow-battery technology, among other…

Soft Condensed Matter · Physics 2015-01-14 Tyler Olsen , Ken Kamrin

The non-linear stress-strain relation for crosslinked polymer networks is studied using molecular dynamics simulations. Previously we demonstrated the importance of trapped entanglements in determining the elastic and relaxational…

Soft Condensed Matter · Physics 2009-10-31 Gary S. Grest , Mathias Puetz , Kurt Kremer , Ralf Everaers

We present the foundations of a projective geometric theory of elasticity, as well as outline a few possible application possibilities. We give the description of the Cauchy stress and infinitesimal strain tensors compatible with coordinate…

Classical Physics · Physics 2024-06-12 Tamás Baranyai

A new mathematical formulation for the constitutive laws governing elastic perfectly plastic materials is proposed here. In particular, it is shown that the elastic strain rate and the plastic strain rate form an orthogonal decomposition…

Analysis of PDEs · Mathematics 2022-07-27 Tahar Z Boulmezaoud , Boualem Khouider

We propose a complexity measure which addresses the functional flexibility of networks. It is conjectured that the functional flexibility is reflected in the topological diversity of the assigned graphs, resulting from a resolution of their…

Condensed Matter · Physics 2009-11-10 Hildegard Meyer-Ortmanns

Disordered spring networks are a useful paradigm to examine macroscopic mechanical properties of amorphous materials. Here, we study the elastic behavior of under-constrained spring networks, i.e.\ networks with more degrees of freedom than…

Soft Condensed Matter · Physics 2023-01-18 Cheng-Tai Lee , Matthias Merkel

We demonstrate that graphs embedded on surfaces are a powerful and practical tool to generate, characterize and simulate networks with a broad range of properties. Remarkably, the study of topologically embedded graphs is non-restrictive…

Other Condensed Matter · Physics 2015-03-19 Tomaso Aste , Ruggero Gramatica , T. Di Matteo

Intrinsic nonlinear elasticity deals with the deformations of elastic bodies as isometric immersions of Riemannian manifolds into the Euclidean spaces (see Ciarlet [9,10]). In this paper, we study the rigidity and continuity properties of…

Analysis of PDEs · Mathematics 2026-02-24 Gui-Qiang G. Chen , Siran Li , Marshall Slemrod