Related papers: Reconfiguring (non-spanning) arborescences
The last in-tree recognition problem asks whether a given spanning tree can be derived by connecting each vertex with its rightmost left neighbor of some search ordering. In this study, we demonstrate that the last-in-tree recognition…
A rerouting sequence is a sequence of shortest st-paths such that consecutive paths differ in one vertex. We study the the Shortest Path Rerouting Problem, which asks, given two shortest st-paths P and Q in a graph G, whether a rerouting…
Arboricity is a graph parameter akin to chromatic number, in that it seeks to partition the vertices into the smallest number of sparse subgraphs. Where for the chromatic number we are partitioning the vertices into independent sets, for…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
In this paper we propose and study a new complexity model for approximation algorithms. The main motivation are practical problems over large data sets that need to be solved many times for different scenarios, e.g., many multicast trees…
Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants. The graph resulting from such…
Inferring probabilistic networks from data is a notoriously difficult task. Under various goodness-of-fit measures, finding an optimal network is NP-hard, even if restricted to polytrees of bounded in-degree. Polynomial-time algorithms are…
Motion planning is a fundamental problem of robotics with applications in many areas of computer science and beyond. Its restriction to graphs has been investigated in the literature for it allows to concentrate on the combinatorial problem…
Many hard algorithmic problems dealing with graphs, circuits, formulas and constraints admit polynomial-time upper bounds if the underlying graph has small treewidth. The same problems often encourage reducing the maximal degree of vertices…
The proper thinness of a graph is an invariant that generalizes the concept of a proper interval graph. Every graph has a numerical value of proper thinness and the graphs with proper thinness~1 are exactly the proper interval graphs. A…
In the Properly Colored Spanning Tree problem, we are given an edge-colored undirected graph and the goal is to find a spanning tree in which any two adjacent edges have distinct colors. Since finding such a tree is NP-hard in general,…
A communication network can be modeled as a directed connected graph with edge weights that characterize performance metrics such as loss and delay. Network tomography aims to infer these edge weights from their pathwise versions measured…
Short spanning trees subject to additional constraints are important building blocks in various approximation algorithms. Especially in the context of the Traveling Salesman Problem (TSP), new techniques for finding spanning trees with…
(Induced) Subgraph Isomorphism and Maximum Common (Induced) Subgraph are fundamental problems in graph pattern matching and similarity computation. In graphs derived from time-series data or protein structures, a natural total ordering of…
The independence number of a tree decomposition is the size of a largest independent set contained in a single bag. The tree-independence number of a graph $G$ is the minimum independence number of a tree decomposition of $G$. As shown…
Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
Given a graph $G$ with a terminal set $R \subseteq V(G)$, the Steiner tree problem (STREE) asks for a set $S\subseteq V(G) \setminus R$ such that the graph induced on $S\cup R$ is connected. A split graph is a graph which can be partitioned…
We study problems of reconfiguration of shortest paths in graphs. We prove that the shortest reconfiguration sequence can be exponential in the size of the graph and that it is NP-hard to compute the shortest reconfiguration sequence even…
Our input is a directed graph $G = (V,E)$ on $n$ vertices and $m$ edges with a designated root vertex $r$ and a function $cost: E \rightarrow \mathbb{R}_{\geq 0}$. The problem is to maintain a min-cost arborescence in $G$ in the presence of…
Suppose that two independent sets $I$ and $J$ of a graph with $\vert I \vert = \vert J \vert$ are given, and a token is placed on each vertex in $I$. The Sliding Token problem is to determine whether there exists a sequence of independent…