Related papers: On Arithmetically Progressed Suffix Arrays and rel…
We prove an upper bound for the length of an arithmetic progression represented by an irreducible integral binary quadratic form or a norm form, which depends only on the form and the progression's common difference. For quadratic forms,…
In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…
We prove that there is a small but fixed positive integer e such that for every prime larger than a fixed integer, every subset S of the integers modulo p which satisfies |2S|<(2+e)|S| and 2(|2S|)-2|S|+2 < p is contained in an arithmetic…
A prefix normal word is a binary word whose prefixes contain at least as many 1s as any of its factors of the same length. Introduced by Fici and Lipt\'ak in 2011 the notion of prefix normality is so far only defined for words over the…
Pattern matching queries on strings can be solved in linear time by Knuth-Morris-Pratt (KMP) algorithm. In 1973, Weiner introduced the suffix tree of a string [FOCS 1973] and showed that the seemingly more difficult problem of computing…
We answer a number of questions of Erd\H{o}s on the existence of arithmetic progressions in $k$-full numbers (i.e. integers with the property that every prime divisor necessarily occurs to at least the $k$-th power). Further, we deduce a…
The NP-complete Permutation Pattern Matching problem asks whether a permutation P (the pattern) can be matched into a permutation T (the text). A matching is an order-preserving embedding of P into T. In the Generalized Permutation Pattern…
In this paper we show that the following problem is NP-complete: Given an alphabet $\Sigma$ and two strings over $\Sigma$, the question is whether there exists a permutation of $\Sigma$ which is a subsequence of both of the given strings.
The extension of pattern avoidance from ordinary permutations to those on multisets gave birth to several interesting enumerative results. We study permutations on regular multisets, i.e., multisets in which each element occurs the same…
A {\it superpattern} is a string of characters of length $n$ that contains as a subsequence, and in a sense that depends on the context, all the smaller strings of length $k$ in a certain class. We prove structural and probabilistic results…
Compositions of tree-walking tree transducers form a hierarchy with respect to the number of transducers in the composition. As main technical result it is proved that any such composition can be realized as a linear bounded composition,…
The all-pairs suffix-prefix (APSP) problem is a classical problem in string processing which has important applications in bioinformatics. Given a set $\mathcal{S} = \{S_1, \ldots, S_k\}$ of $k$ strings, the APSP problem asks one to compute…
Suffixient sets are a novel prefix array (PA) compression technique based on subsampling PA (rather than compressing the entire array like previous techniques used to do): by storing very few entries of PA (in fact, a compressed number of…
Permutation polynomials with few terms (especially permutation binomials) attract many people due to their simple algebraic structure. Despite the great interests in the study of permutation binomials, a complete characterization of…
An infinite permutation $\alpha$ is a linear ordering of $\mathbb N$. We study properties of infinite permutations analogous to those of infinite words, and show some resemblances and some differences between permutations and words. In this…
Suffix trees are one of the most versatile data structures in stringology, with many applications in bioinformatics. Their main drawback is their size, which can be tens of times larger than the input sequence. Much effort has been put into…
Many consensus string problems are based on Hamming distance. We replace Hamming distance by the more flexible (e.g., easily coping with different input string lengths) dynamic time warping distance, best known from applications in time…
A language over an alphabet $B = A \cup \overline{A}$ of opening ($A$) and closing ($\overline{A}$) brackets, is balanced if it is a subset of the Dyck language $D_B$ over $B$, and it is well-formed if all words are prefixes of words in…
It is known that the exact form of the Burrows-Wheeler-Transform (BWT) of a string collection depends, in most implementations, on the input order of the strings in the collection. Reordering strings of an input collection affects the…
We present parallel algorithms for exact and approximate pattern matching with suffix arrays, using a CREW-PRAM with $p$ processors. Given a static text of length $n$, we first show how to compute the suffix array interval of a given…