English
Related papers

Related papers: Linear-Time Model Checking Branching Processes

200 papers

We introduce a model for the evolution of species triggered by generation of novel features and exhaustive combination with other available traits. Under the assumption that innovations are rare, we obtain a bursty branching process of…

Populations and Evolution · Quantitative Biology 2014-01-29 Stephanie Keller-Schmidt , Konstantin Klemm

We consider the model checking problem for probabilistic pushdown automata (pPDA) and properties expressible in various probabilistic logics. We start with properties that can be formulated as instances of a generalized random walk problem.…

Logic in Computer Science · Computer Science 2017-01-11 Javier Esparza , Antonin Kucera , Richard Mayr

Propositional Projection Temporal Logic (PPTL) is a useful formalism for reasoning about period of time in hardware and software systems and can handle both sequential and parallel compositions. In this paper, based on discrete time Markov…

Logic in Computer Science · Computer Science 2010-11-08 Xiaoxiao Yang

Motivated as a null model for comparison with data, we study the following model for a phylogenetic tree on $n$ extant species. The origin of the clade is a random time in the past, whose (improper) distribution is uniform on $(0,\infty)$.…

Probability · Mathematics 2007-05-23 David J. Aldous , Lea Popovic

The branching algorithm is a fundamental technique for designing fast exponential-time algorithms to solve combinatorial optimization problems exactly. It divides the entire solution space into independent search branches using…

Optimization and Control · Mathematics 2024-12-11 Xuan-Zhao Gao , Yi-Jia Wang , Pan Zhang , Jin-Guo Liu

Verification of infinite-state Markov chains is still a challenge despite several fruitful numerical or statistical approaches. For decisive Markov chains, there is a simple numerical algorithm that frames the reachability probability as…

Logic in Computer Science · Computer Science 2024-09-30 Benoît Barbot , Patricia Bouyer , Serge Haddad

Probabilistic model checking can provide formal guarantees on the behavior of stochastic models relating to a wide range of quantitative properties, such as runtime, energy consumption or cost. But decision making is typically with respect…

Logic in Computer Science · Computer Science 2024-03-19 Ingy Elsayed-Aly , David Parker , Lu Feng

Hybrid systems whose mode dynamics are governed by non-linear ordinary differential equations (ODEs) are often a natural model for biological processes. However such models are difficult to analyze. To address this, we develop a…

Systems and Control · Computer Science 2015-06-23 Benjamin M. Gyori , Bing Liu , Soumya Paul , R. Ramanathan , P. S. Thiagarajan

A particular continuous-time multitype branching process is considered, it is the continuous-time embedding of a discrete-time process which is very popular in theoretical computer science: the m-ary search tree (m is an integer). There is…

Probability · Mathematics 2011-12-02 Brigitte Chauvin , Quansheng Liu , Nicolas Pouyanne

We consider a general class of branching processes in discrete time, where particles have types belonging to a Polish space and reproduce independently according to their type. If the process is critical and the mean distribution of types…

Probability · Mathematics 2024-12-23 Félix Foutel-Rodier

Stem cells, through their ability to produce daughter stem cells and differentiate into specialized cells, are essential in the growth, maintenance, and repair of biological tissues. Understanding the dynamics of cell populations in the…

Applications · Statistics 2026-02-02 Huyen Nguyen , Haim Bar , Zhiyi Chi , Vladimir Pozdnyakov

Since the topic emerged several years ago, work on regular model checking has mostly been devoted to the verification of state reachability and safety properties. Though it was known that linear temporal properties could also be checked…

Logic in Computer Science · Computer Science 2009-01-27 Ahmed Bouajjani , Axel Legay , Pierre Wolper

We provide decidability and undecidability results on the model-checking problem for infinite tree structures. These tree structures are built from sequences of elements of infinite relational structures. More precisely, we deal with the…

Logic in Computer Science · Computer Science 2011-11-15 Alex Spelten , Wolfgang Thomas , Sarah Winter

Basic Parallel Processes (BPPs) are a well-known subclass of Petri Nets. They are the simplest common model of concurrent programs that allows unbounded spawning of processes. In the probabilistic version of BPPs, every process generates…

Logic in Computer Science · Computer Science 2014-01-17 Rémi Bonnet , Stefan Kiefer , Anthony W. Lin

Characterisations theorems serve as important tools in model theory and can be used to assess and compare the expressive power of temporal languages used for the specification and verification of properties in formal methods. While complete…

Logic in Computer Science · Computer Science 2024-04-30 Massimo Benerecetti , Laura Bozzelli , Fabio Mogavero , Adriano Peron

Temporal logic is a very powerful formalism deeply investigated and used in formal system design and verification. Its application usually reduces to solving specific decision problems such as model checking and satisfiability. In these…

Logic in Computer Science · Computer Science 2016-09-15 Gaëlle Fontaine , Fabio Mogavero , Aniello Murano , Giuseppe Perelli , Loredana Sorrentino

Probabilistic timed automata are an extension of timed automata with discrete probability distributions. We consider model-checking algorithms for the subclasses of probabilistic timed automata which have one or two clocks. Firstly, we show…

Logic in Computer Science · Computer Science 2019-03-14 Marcin Jurdzinski , Francois Laroussinie , Jeremy Sproston

We introduce block Markov chains (BMCs) indexed by an infinite rooted tree. It turns out that BMCs define a new class of tree-indexed Markovian processes. We clarify the structure of BMCs in connection with Markov chains (MCs) and Markov…

Probability · Mathematics 2020-08-25 Abdessatar Souissi

In this paper, we study model-checking of linear-time properties in multi-valued systems. Safety property, invariant property, liveness property, persistence and dual-persistence properties in multi-valued logic systems are introduced. Some…

Logic in Computer Science · Computer Science 2016-09-27 Yongming Li , Manfred Droste , Lihui Lei

The evolution of aligned DNA sequence sites is generally modeled by a Markov process operating along the edges of a phylogenetic tree. It is well known that the probability distribution on the site patterns at the tips of the tree…

Populations and Evolution · Quantitative Biology 2013-10-15 Benny Chor , Mike Steel