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PHYSBO (optimization tools for PHYSics based on Bayesian Optimization) is a Python library for fast and scalable Bayesian optimization. It has been developed mainly for application in the basic sciences such as physics and materials…

Computational Physics · Physics 2022-05-26 Yuichi Motoyama , Ryo Tamura , Kazuyoshi Yoshimi , Kei Terayama , Tsuyoshi Ueno , Koji Tsuda

Understanding land cover holds considerable potential for a myriad of practical applications, particularly as data accessibility transitions from being exclusive to governmental and commercial entities to now including the broader research…

Computer Vision and Pattern Recognition · Computer Science 2025-07-15 Victor Radermecker , Andrea Zanon , Nancy Thomas , Annita Vapsi , Saba Rahimi , Rama Ramakrishnan , Daniel Borrajo

We introduce Docling, an easy-to-use, self-contained, MIT-licensed, open-source toolkit for document conversion, that can parse several types of popular document formats into a unified, richly structured representation. It is powered by…

We introduce a Python framework designed to automate the most common tasks associated with the extraction and upscaling of the statistics of single-impact crater functions to inform coefficients of continuum equations describing surface…

Computational Physics · Physics 2014-10-31 Scott A. Norris

In modern software development, Python third-party libraries play a critical role, especially in fields like deep learning and scientific computing. However, API parameters in these libraries often change during evolution, leading to…

Software Engineering · Computer Science 2025-12-24 Shuai Zhang , Guanping Xiao , Jun Wang , Huashan Lei , Gangqiang He , Yepang Liu , Zheng Zheng

Yield monitor datasets are known to contain a high percentage of unreliable records. The current tool set is mostly limited to observation cleaning procedures based on heuristic or empirically-motivated statistical rules for extreme value…

Methodology · Statistics 2022-09-26 Luis Damiano , Jarad Niemi

Forecasts help businesses allocate resources and achieve objectives. At LinkedIn, product owners use forecasts to set business targets, track outlook, and monitor health. Engineers use forecasts to efficiently provision hardware. Developing…

Machine Learning · Computer Science 2022-07-19 Reza Hosseini , Albert Chen , Kaixu Yang , Sayan Patra , Yi Su , Saad Eddin Al Orjany , Sishi Tang , Parvez Ahammad

Addressing a real world sequential decision problem with Reinforcement Learning (RL) usually starts with the use of a simulated environment that mimics real conditions. We present a novel open source RL environment for realistic crop…

Artificial Intelligence · Computer Science 2022-09-28 Romain Gautron , Emilio J. Padrón , Philippe Preux , Julien Bigot , Odalric-Ambrym Maillard , David Emukpere

This paper describes the PySLHA package, a Python language module and program collection for reading, writing and visualising SUSY model data in the SLHA format. PySLHA can read and write SLHA data in a very general way, including the…

High Energy Physics - Phenomenology · Physics 2015-07-30 Andy Buckley

We introduce NetworKit, an open-source software package for analyzing the structure of large complex networks. Appropriate algorithmic solutions are required to handle increasingly common large graph data sets containing up to billions of…

Social and Information Networks · Computer Science 2015-11-16 Christian L. Staudt , Aleksejs Sazonovs , Henning Meyerhenke

New and upgraded radio interferometers produce data at massive rates and will require significant improvements in analysis techniques to reach their promised levels of performance in a routine manner. Until these techniques are fully…

Instrumentation and Methods for Astrophysics · Physics 2012-06-29 Peter K. G. Williams , Casey J. Law , Geoffrey C. Bower

Trajectory optimization is a widely used technique in robot motion planning for letting the dynamics and constraints on the system shape and synthesize complex behaviors. Several previous works have shown its benefits in high-dimensional…

Robotics · Computer Science 2024-03-19 Ramkumar Natarajan , Shohin Mukherjee , Howie Choset , Maxim Likhachev

Background: The development, optimization and validation of protein modeling methods require efficient tools for structural comparison. Frequently, a large number of models need to be compared with the target native structure. The main…

Biomolecules · Quantitative Biology 2013-03-04 Jamróz Michał , Koliński Andrzej

In this paper, we present WildlifeDatasets (https://github.com/WildlifeDatasets/wildlife-datasets) - an open-source toolkit intended primarily for ecologists and computer-vision / machine-learning researchers. The WildlifeDatasets is…

Computer Vision and Pattern Recognition · Computer Science 2023-12-15 Vojtěch Čermák , Lukas Picek , Lukáš Adam , Kostas Papafitsoros

Spark SQL has been widely deployed in industry but it is challenging to tune its performance. Recent studies try to employ machine learning (ML) to solve this problem, but suffer from two drawbacks. First, it takes a long time (high…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-09 Jinhan Xin , Kai Hwang , Zhibin Yu

Simulation is a foundational tool for the analysis and testing of cyber-physical systems (CPS), underpinning activities such as algorithm development, runtime monitoring, and system verification. As CPS grow in complexity and scale,…

Software Engineering · Computer Science 2025-06-13 Quinn Thibeault , Giulia Pedrielli

Multi-tenant machine learning services have become emerging data-intensive workloads in data centers with heavy usage of GPU resources. Due to the large scale, many tuning parameters and heavy resource usage, it is usually impractical to…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-11 Ruofan Liang , Bingsheng He , Shengen Yan , Peng Sun

We describe how Python can be leveraged to streamline the curation, modelling and dissemination of drug discovery data as well as the development of innovative, freely available tools for the related scientific community. We look at various…

Other Computer Science · Computer Science 2016-07-05 Michał Nowotka , George Papadatos , Mark Davies , Nathan Dedman , Anne Hersey

PyPWA is a toolkit designed to optimize parametric models describing data and generate simulated distributions according to a model. Its software has been written within the python ecosystem with the goal of performing Amplitude or Partial…

Data Analysis, Statistics and Probability · Physics 2023-06-06 Mark Jones , Peter Hurck , William Phelps , Carlos W. Salgado

To facilitate flexible and efficient structural bioinformatics analyses, new functionality for three-dimensional structure processing and analysis has been introduced into PyCogent -- a popular feature-rich framework for sequence-based…

Biomolecules · Quantitative Biology 2018-10-01 Marcin Cieslik , Zygmunt Derewenda , Cameron Mura