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This paper discusses the design and implementation of a Python-based toolset to aid in assessing the response of the UK's Advanced Gas Reactor nuclear power stations to earthquakes. The seismic analyses themselves are carried out with a…

Computational Engineering, Finance, and Science · Computer Science 2014-12-22 Steve Brasier , Fred Pollard

BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provide a 'brainless' development experience, minimizing…

Pyserini is an easy-to-use Python toolkit that supports replicable IR research by providing effective first-stage retrieval in a multi-stage ranking architecture. Our toolkit is self-contained as a standard Python package and comes with…

Information Retrieval · Computer Science 2021-02-22 Jimmy Lin , Xueguang Ma , Sheng-Chieh Lin , Jheng-Hong Yang , Ronak Pradeep , Rodrigo Nogueira

Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

Decision making in uncertain scenarios is an ubiquitous challenge in real world systems. Tools to deal with this challenge include simulations to gather information and statistical emulation to quantify uncertainty. The machine learning…

Machine Learning · Computer Science 2021-10-27 Andrei Paleyes , Mark Pullin , Maren Mahsereci , Cliff McCollum , Neil D. Lawrence , Javier Gonzalez

Sustainable sanitation and resource recovery technologies are needed to address rapid environmental and socioeconomic changes. Research prioritization is critical to expedite the development and deployment of such technologies across their…

Recent advancements in Generative AI offer promising capabilities for spatial analysis. Despite their potential, the integration of generative AI with established GIS platforms remains underexplored. In this study, we propose a framework…

Artificial Intelligence · Computer Science 2024-11-25 Temitope Akinboyewa , Zhenlong Li , Huan Ning , M. Naser Lessani

Molecular simulations are an important tool for research in physics, chemistry, and biology. The capabilities of simulations can be greatly expanded by providing access to advanced sampling methods and techniques that permit calculation of…

This paper presents PyJobShop, an open-source Python library for solving scheduling problems with constraint programming. PyJobShop provides an easy-to-use modeling interface that supports a wide variety of scheduling problems, including…

Optimization and Control · Mathematics 2025-02-20 Leon Lan , Joost Berkhout

Reliable parameter extraction from experimental data is central to quantitative analysis in spectroscopy, diffraction, photoluminescence, chromatography, microscopy, and time-resolved measurements. We present FitED, a Python-based desktop…

Data Analysis, Statistics and Probability · Physics 2026-05-04 Mustafa Mahmoud Aboulsaad

Mixed-use urbanism affords access to diverse assortments of land-uses within a pedestrian-accessible context. It confers advantages such as reductions to driving, air pollution, and Body Mass Index with associated increases in active…

Physics and Society · Physics 2021-07-02 Gareth D. Simons

In this paper, we present a nonlinear analysis software toolkit, which can help in biomechanical gait data analysis by implementing various nonlinear statistical analysis algorithms. The toolkit is proposed to tackle the need for an…

Emerging Technologies · Computer Science 2023-11-14 Shifat Sarwar , Aaron Likens , Nick Stergiou , Spyridon Mastorakis

This monograph presents the design, implementation, and evaluation of Pyroclast, a modular high-performance Python framework for large-scale geodynamic simulations. Pyroclast addresses limitations of legacy geodynamics solvers, often…

Mathematical Software · Computer Science 2026-03-17 Marcel Ferrari

The last decade has witnessed the emergence of massive mobility data sets, such as tracks generated by GPS devices, call detail records, and geo-tagged posts from social media platforms. These data sets have fostered a vast scientific…

Physics and Society · Physics 2021-06-07 Luca Pappalardo , Filippo Simini , Gianni Barlacchi , Roberto Pellungrini

The exponential growth of complex data demands fully automatic clustering. Gaussian mixture models (GMMs) provide uncertainty-aware grouping but often require expertise to specify hyperparameters, e.g., component count and covariance…

Machine Learning · Computer Science 2025-09-10 Tingshan Liu , Thomas L. Athey , Benjamin D. Pedigo , Joshua T. Vogelstein

Dataset Search -- the process of finding appropriate datasets for a given task -- remains a critical yet under-explored challenge in data science workflows. Assessing dataset suitability for a task (e.g., training a classification model) is…

Human-Computer Interaction · Computer Science 2025-07-28 Rachel Lin , Bhavya Chopra , Wenjing Lin , Shreya Shankar , Madelon Hulsebos , Aditya G. Parameswaran

We present iSLAT (the Interactive Spectral-Line Analysis Tool), a python-based graphical tool that allows users to interactively explore and manually fit line emission observed in molecular spectra. iSLAT adopts a simple slab model that…

Instrumentation and Methods for Astrophysics · Physics 2024-02-07 Evan Jellison , Matthew Johnson , Andrea Banzatti , Simon Bruderer

Mathematical models allow us to gain a deeper understanding of real-world dynamical systems. One of the most powerful mathematical frameworks for modeling real-world phenomena are systems of differential equations. In the majority of fields…

Disordered Systems and Neural Networks · Physics 2023-05-02 Richard Gast , Thomas R. Knösche , Ann Kennedy

The R arules package implements a comprehensive infrastructure for representing, manipulating, and analyzing transaction data and patterns using frequent itemsets and association rules. The package also provides a wide range of interest…

Databases · Computer Science 2023-05-25 Michael Hahsler

Local governments, as part of 'smart city' initiatives and to promote interoperability, are increasingly incorporating open-source software into their data management, analysis, and visualisation workflows. Python, with its concise and…

Computers and Society · Computer Science 2022-03-01 Gregor Herda , Robert McNabb