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Python has become the de-facto language for training deep neural networks, coupling a large suite of scientific computing libraries with efficient libraries for tensor computation such as PyTorch or TensorFlow. However, when models are used…

Machine Learning · Computer Science 2021-04-02 Zachary DeVito , Jason Ansel , Will Constable , Michael Suo , Ailing Zhang , Kim Hazelwood

Data engineering is becoming an increasingly important part of scientific discoveries with the adoption of deep learning and machine learning. Data engineering deals with a variety of data formats, storage, data extraction, transformation,…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-14 Vibhatha Abeykoon , Niranda Perera , Chathura Widanage , Supun Kamburugamuve , Thejaka Amila Kanewala , Hasara Maithree , Pulasthi Wickramasinghe , Ahmet Uyar , Geoffrey Fox

The high-performance computing (HPC) landscape is undergoing rapid transformation, with an increasing emphasis on energy-efficient and heterogeneous computing environments. This comprehensive study extends our previous research on SYCL's…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-15 Manuel Costanzo , Enzo Rucci , Carlos García-Sánchez , Marcelo Naiouf , Manuel Prieto-Matías

Applications are increasingly written as dynamic workflows underpinned by an execution framework that manages asynchronous computations across distributed hardware. However, execution frameworks typically offer one-size-fits-all solutions…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-18 J. Gregory Pauloski , Klaudiusz Rydzy , Valerie Hayot-Sasson , Ian Foster , Kyle Chard

The deep learning language of choice these days is Python; measured by factors such as available libraries and technical support, it is hard to beat. At the same time, software written in lower-level programming languages like C++ retain…

Computation and Language · Computer Science 2024-08-23 Thamme Gowda , Roman Grundkiewicz , Elijah Rippeth , Matt Post , Marcin Junczys-Dowmunt

Scientific workflow systems are increasingly popular for expressing and executing complex data analysis pipelines over large datasets, as they offer reproducibility, dependability, and scalability of analyses by automatic parallelization on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-09 Mario Sänger , Ninon De Mecquenem , Katarzyna Ewa Lewińska , Vasilis Bountris , Fabian Lehmann , Ulf Leser , Thomas Kosch

Computing has revolutionized the biological sciences over the past several decades, such that virtually all contemporary research in the biosciences utilizes computer programs. The computational advances have come on many fronts, spurred by…

Other Quantitative Biology · Quantitative Biology 2021-08-23 Berk Ekmekci , Charles E. McAnany , Cameron Mura

Although high-level synthesis (HLS) tools have significantly improved programmer productivity over hardware description languages, developing for FPGAs remains tedious and error prone. Programmers must learn and implement a large set of…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-29 Johannes de Fine Licht , Tiziano De Matteis , Tal Ben-Nun , Andreas Kuster , Oliver Rausch , Manuel Burger , Carl-Johannes Johnsen , Torsten Hoefler

Python is a multi-paradigm programming language that fully supports object-oriented (OO) programming. The language allows writing code in a non-procedural imperative manner, using procedures, using classes, or in a functional style. To…

Software Engineering · Computer Science 2022-09-07 Robert Dyer , Jigyasa Chauhan

The Epiphany is a many-core, low power, low on-chip memory architecture and one can very cheaply gain access to a number of parallel cores which is beneficial for HPC education and prototyping. The very low power nature of these…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-29 Nick Brown

The ability to understand how a scientific application is executed on a large HPC system is of great importance in allocating resources within the HPC data center. In this paper, we describe how we used system performance data to identify:…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-15 David Brayford , Christoph Bernau , Wolfram Hesse , Carla Guillen

This paper describes HyperStream, a large-scale, flexible and robust software package, written in the Python language, for processing streaming data with workflow creation capabilities. HyperStream overcomes the limitations of other…

Machine Learning · Computer Science 2019-08-09 Tom Diethe , Meelis Kull , Niall Twomey , Kacper Sokol , Hao Song , Miquel Perello-Nieto , Emma Tonkin , Peter Flach

High performance computing has been used in various fields of astrophysical research. But most of it is implemented on massively parallel systems (supercomputers) or graphical processing unit clusters. With the advent of multicore…

Instrumentation and Methods for Astrophysics · Physics 2013-07-30 Navtej Singh , Lisa-Marie Browne , Ray Butler

The Python library FatGHol FatGHoL used in Murri2012 to reckon the rational homology of the moduli space of Riemann surfaces is an example of a non-numeric scientific code: most of the processing it does is generating graphs (represented by…

Mathematical Software · Computer Science 2014-04-30 Riccardo Murri

There has been an increasing interest in and growing need for high performance computing (HPC), popularly known as supercomputing, in domains such as textual analytics, business domains analytics, forecasting and natural language processing…

Computers and Society · Computer Science 2021-04-20 Jim Samuel , Margaret Brennan-Tonetta , Yana Samuel , Pradeep Subedi , Jack Smith

Python and Prolog express different programming paradigms, with different strengths. Python is wildly popular because it is well-structured, easy to use, and mixes well with thousands of scientific and machine learning programs written in…

Programming Languages · Computer Science 2023-08-31 Theresa Swift , Carl Andersen

For decades, the use of HPC systems was limited to those in the physical sciences who had mastered their domain in conjunction with a deep understanding of HPC architectures and algorithms. During these same decades, consumer computing…

Python, one of the most prevalent programming languages today, is widely utilized in various domains, including web development, data science, machine learning, and DevOps. Recent scholarly efforts have proposed a methodology to assess…

Process mining, i.e., a sub-field of data science focusing on the analysis of event data generated during the execution of (business) processes, has seen a tremendous change over the past two decades. Starting off in the early 2000's, with…

Software Engineering · Computer Science 2019-05-16 Alessandro Berti , Sebastiaan J. van Zelst , Wil van der Aalst

Technological advances in the past decade, hardware and software alike, have made access to high-performance computing (HPC) easier than ever. We review these advances from a statistical computing perspective. Cloud computing makes access…

Computation · Statistics 2021-07-19 Seyoon Ko , Hua Zhou , Jin J. Zhou , Joong-Ho Won