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Background and objective: Cell migration is essential for many biological phenomena with direct impact on human health and disease. One conventional approach to study cell migration involves the quantitative analysis of individual cell…

Quantitative Methods · Quantitative Biology 2023-03-14 Nirbhaya Shajia , Florbela Nunes , M. Ines Rocha , Elsa Ferreira Gomes , Helena Castro

Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve…

Computation and Language · Computer Science 2025-03-11 Clémence Sebe , Sarah Cohen-Boulakia , Olivier Ferret , Aurélie Névéol

This paper presents linear DML models for causal inference using the simplest Python code on a Jupyter notebook based on an Anaconda platform and compares the performance of different DML models. The results show that current Library API…

Software Engineering · Computer Science 2025-02-25 Shunxin Yao

Selecting the optimal cloud target to migrate SQL estates from on-premises to the cloud remains a challenge. Current solutions are not only time-consuming and error-prone, requiring significant user input, but also fail to provide…

Simulators driven by deep learning are gaining popularity as a tool for efficiently emulating accurate but expensive numerical simulators. Successful applications of such neural simulators can be found in the domains of physics, chemistry,…

Quantitative Methods · Quantitative Biology 2022-11-04 Koen Minartz , Yoeri Poels , Vlado Menkovski

While point-based neural architectures have demonstrated their efficacy, the time-consuming sampler currently prevents them from performing real-time reasoning on scene-level point clouds. Existing methods attempt to overcome this issue by…

Computer Vision and Pattern Recognition · Computer Science 2023-05-24 Junyuan Ouyang , Xiao Liu , Haoyao Chen

We propose an approach to utilize idle computational resources of supercomputers. The idea is to maintain an additional queue of low-priority non-parallel jobs and execute them in containers, using container migration tools to break the…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-04 Julia Dubenskaya , Stanislav Polyakov

We present a controlled, quantitative study with 12 participants comparing interaction with a haptically enhanced mixing board against interaction with a mouse in an abstract task that is motivated by several practical parameter space…

Human-Computer Interaction · Computer Science 2011-10-13 Steven Bergner , Matthew Crider , Arthur E. Kirkpatrick , Torsten Möller

The enabling of scientific experiments that are embarrassingly parallel, long running and data-intensive into a cloud-based execution environment is a desirable, though complex undertaking for many researchers. The management of such…

We study the application of active learning techniques to the translation of unbounded data streams via interactive neural machine translation. The main idea is to select, from an unbounded stream of source sentences, those worth to be…

Computation and Language · Computer Science 2018-10-26 Álvaro Peris , Francisco Casacuberta

A National Science Foundation-sponsored container runtimes investigation was conducted by the Aristotle Cloud Federation to better understand the challenges of selecting and using Docker, Singularity, and X-Containers. The main goal of this…

Automated object detection has become increasingly valuable across diverse applications, yet efficient, high-quality annotation remains a persistent challenge. In this paper, we present the development and evaluation of a platform designed…

Computer Vision and Pattern Recognition · Computer Science 2025-03-28 Sönke Tenckhoff , Mario Koddenbrock , Erik Rodner

Multi-socket machines with 1-100 TBs of physical memory are becoming prevalent. Applications running on multi-socket machines suffer non-uniform bandwidth and latency when accessing physical memory. Decades of research have focused on data…

Operating Systems · Computer Science 2019-11-11 Reto Achermann , Ashish Panwar , Abhishek Bhattacharjee , Timothy Roscoe , Jayneel Gandhi

The edge detection task is essential in image processing aiming to extract relevant information from an image. One recurring problem in this task is the weaknesses found in some detectors, such as the difficulty in detecting loose edges and…

Computer Vision and Pattern Recognition · Computer Science 2025-10-31 Vinícius Ferraria , Eurico Ruivo

An entirely novel synthesis combines the applied cognitive psychology of a task analytic approach with a neural cell assembly perspective that models both brain and mind function during task performance; similar cell assemblies could be…

Human-Computer Interaction · Computer Science 2019-10-25 Dan Diaper , Chris Huyck

Recent advances in computing architectures and networking are bringing parallel computing systems to the masses so increasing the number of potential users of these kinds of systems. In particular, two important technological evolutions are…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-05 Gabriele D'Angelo , Moreno Marzolla

We are exploring the enhancement of models of agent behaviour with more "human-like" decision making strategies than are presently available. Our motivation is to developed with a view to as the decision analysis and support for electric…

Multiagent Systems · Computer Science 2009-12-22 Yee Ming Chen , Bo-Yuan Wang , Hung-Ming Shiu

Emulation has been successfully applied across a wide variety of scientific disciplines for efficiently analysing computationally intensive models. We develop known boundary emulation strategies which utilise the fact that, for many…

Methodology · Statistics 2020-03-16 Samuel E. Jackson , Ian Vernon

We present a model for measuring the impact of offloading soft real-time jobs over multi-tier cloud infrastructures. The jobs originate in mobile devices and offloading strategies may choose to execute them locally, in neighbouring devices,…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-03 Joaquim Silva , Eduardo R. B. Marques , Luís M. B Lopes , Fernando Silva

Multicore systems present on-board memory hierarchies and communication networks that influence performance when executing shared memory parallel codes. Characterising this influence is complex, and understanding the effect of particular…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-01 O. G. Lorenzo , M. L. Becoña , T. F. Pena , J. C. Cabaleiro , J. A. Lorenzo , F. F. Rivera
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