Related papers: A Simple Linear-Time Algorithm for the Common Refi…
We prove that finding a rooted subtree with at least $k$ leaves in a digraph is a fixed parameter tractable problem. A similar result holds for finding rooted spanning trees with many leaves in digraphs from a wide family $\cal L$ that…
The LR-drawing-method is a method of drawing an ordered rooted binary tree based on drawing one root-to-leaf path on a vertical line and attaching recursively obtained drawings of the subtrees on the left and right. In this paper, we study…
Consider a tree $T=(V,E)$ with root $\circ$ and edge length function $\ell:E\to\mathbb{R}_+$. The phylogenetic covariance matrix of $T$ is the matrix $C$ with rows and columns indexed by $L$, the leaf set of $T$, with entries…
This article presents a strongly polynomial-time algorithm for the general linear programming problem. This algorithm is an implicit reduction procedure that works as follows. Primal and dual problems are combined into a special system of…
The Maximum Agreement Forest (Maf) problem is a well-studied problem in evolutionary biology, which asks for a largest common subforest of a given collection of phylogenetic trees with identical leaf label-set. However, the previous work…
Recently Kubica et al. (Inf. Process. Let., 2013) and Kim et al. (submitted to Theor. Comp. Sci.) introduced order-preserving pattern matching. In this problem we are looking for consecutive substrings of the text that have the same "shape"…
Evolution is a process that is influenced by various environmental factors, e.g. the interactions between different species, genes, and biogeographical properties. Hence, it is interesting to study the combined evolutionary history of…
In 1998, B\"{o}cker and Dress gave a 1-to-1 correspondence between symbolically dated rooted trees and symbolic ultrametrics. We consider the corresponding problem for unrooted trees. More precisely, given a tree $T$ with leaf set $X$ and a…
Sparse coding consists in representing signals as sparse linear combinations of atoms selected from a dictionary. We consider an extension of this framework where the atoms are further assumed to be embedded in a tree. This is achieved…
We present a novel asynchronous hyper linear time temporal logic named LPrL (Linear Time Predicate Logic) and establish its basic theory. LPrL is a natural first order extension of LTL (Linear time temporal logic), in which the predicates…
While Large Language Models (LLMs) have shown significant potential in assisting peer review, current methods often struggle to generate thorough and insightful reviews while maintaining efficiency. In this paper, we propose TreeReview, a…
The tree-depth problem can be seen as finding an elimination tree of minimum height for a given input graph $G$. We introduce a bicriteria generalization in which additionally the width of the elimination tree needs to be bounded by some…
Given an edge-weighted undirected graph and a list of k source-sink pairs of vertices, the well-known minimum multicut problem consists in selecting a minimum-weight set of edges whose removal leaves no path between every source and its…
Solving arithmetic word problems is a cornerstone task in assessing language understanding and reasoning capabilities in NLP systems. Recent works use automatic extraction and ranking of candidate solution equations providing the answer to…
Kernel pruning methods have been proposed to speed up, simplify, and improve explanation of convolutional neural network (CNN) models. However, the effectiveness of a simplified model is often below the original one. In this letter, we…
Given a graph $G$ and two spanning trees $T$ and $T'$ in $G$, Spanning Tree Reconfiguration asks whether there is a step-by-step transformation from $T$ to $T'$ such that all intermediates are also spanning trees of $G$, by exchanging an…
We study the crossing-minimization problem in a layered graph drawing of planar-embedded rooted trees whose leaves have a given total order on the first layer, which adheres to the embedding of each individual tree. The task is then to…
Finding a provably correct subquadratic synchronization algorithm for many filesystem replicas is one of the main theoretical problems in Operational Transformation (OT) and Conflict-free Replicated Data Types (CRDT) frameworks. Based on…
In this paper I present general outlook on questions relevant to the basic graph algorithms; Finding the Shortest Path with Positive Weights and Minimum Spanning Tree. I will show so far known solution set of basic graph problems and…
The longest common extension (LCE) of two indices in a string is the length of the longest identical substrings starting at these two indices. The LCE problem asks to preprocess a string into a compact data structure that supports fast LCE…