Related papers: SoFiA 2 -- An automated, parallel HI source findin…
In this paper, we propose TAPA, an end-to-end framework that compiles a C++ task-parallel dataflow program into a high-frequency FPGA accelerator. Compared to existing solutions, TAPA has two major advantages. First, TAPA provides a set of…
Ultrasound super-localization microscopy techniques presented in the last few years enable non-invasive imaging of vascular structures at the capillary level by tracking the flow of ultrasound contrast agents (gas microbubbles). However,…
We present an automated, DAOFind-based pipeline developed to reprocess J-band Atlas All Sky Release Survey Images from the Two Micron All Sky Survey (2MASS). By optimizing the detection parameters and implementing a screening procedure that…
(Sub-)millimetre single-dish telescopes feature faster mapping speeds and access larger spatial scales than their interferometric counterparts. However, atmospheric fluctuations tend to dominate their signals and complicate recovery of the…
In this paper, we describe the optical imaging data processing pipeline developed for the Subaru Telescope's Hyper Suprime-Cam (HSC) instrument. The HSC Pipeline builds on the prototype pipeline being developed by the Large Synoptic Survey…
We present a new methodology to analyse in a comprehensive way large-scale and supernovae (or any other distance indicator) surveys. Our approach combines galaxy and supernova position and redshift data with supernova peculiar velocities,…
Big earth science data offers the scientific community great opportunities. Many more studies at large-scales, over long-terms and at high resolution can now be conducted using the rich information collected by remote sensing satellites,…
We developed a software pipeline for quality control (QC) of histopathology whole slide images (WSIs) that segments various regions, such as blurs of different levels, tissue regions, tissue folds, and pen marks. Given the necessity and…
We present the Early Data Release of the Sydney-AAO Multi-object Integral field spectrograph (SAMI) Galaxy Survey. The SAMI Galaxy Survey is an ongoing integral field spectroscopic survey of ~3400 low-redshift (z<0.12) galaxies, covering…
We provide an overview of tools enabling users to utilize data from open sources for decision-making support in weakly-structured subject domains. Presently, it is impossible to replace expert data with data from open sources in the process…
Here we propose FastFCA-AS, an accelerated algorithm for Full-rank spatial Covariance Analysis (FCA), which is a robust audio source separation method proposed by Duong et al. ["Under-determined reverberant audio source separation using a…
The Australian SKA Pathfinder (ASKAP) will be a powerful instrument for performing large-scale surveys of galaxies. Its frequency range and large field of view makes it especially useful for an all-sky survey of Local Volume galaxies, and…
We propose, implement, and experimentally evaluate a runtime middleware to support high-throughput execution on hybrid cluster machines of large-scale analysis applications. A hybrid cluster machine consists of computation nodes which have…
In the era of the SKA precursors, telescopes are producing deeper, larger images of the sky on increasingly small time-scales. The greater size and volume of images place an increased demand on the software that we use to create catalogues,…
Objective: To (1) demonstrate the implementation of a data science platform built on open-source technology within a large, academic healthcare system and (2) describe two computational healthcare applications built on such a platform.…
Context. Apertif is a multi-beam receiver system for the Westerbork Synthesis Radio Telescope that operates at 1.1-1.5 GHz, which overlaps with various radio services, resulting in contamination of astronomical signals with radio-frequency…
We describe the first season COMAP analysis pipeline that converts raw detector readouts to calibrated sky maps. This pipeline implements four main steps: gain calibration, filtering, data selection, and map-making. Absolute gain…
Simflowny is an open platform which automatically generates efficient parallel code of scientific dynamical models for different simulation frameworks. Here we present major upgrades on this software to support simultaneously a quite…
The Simple Image Access protocol (SIA) provides capabilities for the discovery, description, access, and retrieval of multi-dimensional image datasets, including 2-D images as well as datacubes of three or more dimensions. SIA data…
[Edited for arXiv] Source extraction in HI radio surveys is still often performed using visual inspection, but the efficacy of such procedures lacks rigorous quantitative assessment due to their laborious nature. Algorithmic methods are…