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Functional differentiation in the brain emerges as distinct regions specialize and is key to understanding brain function as a complex system. Previous research has modeled this process using artificial neural networks with specific…

Neurons and Cognition · Quantitative Biology 2025-11-17 Yuki Tomoda , Ichiro Tsuda , Yutaka Yamaguti

Methods for learning Bayesian network structure can discover dependency structure between observed variables, and have been shown to be useful in many applications. However, in domains that involve a large number of variables, the space of…

Machine Learning · Computer Science 2012-12-12 Eran Segal , Dana Pe'er , Aviv Regev , Daphne Koller , Nir Friedman

Modularity is widely used to effectively measure the strength of the disjoint community structure found by community detection algorithms. Although several overlapping extensions of modularity were proposed to measure the quality of…

Social and Information Networks · Computer Science 2018-07-02 Mingming Chen , Konstantin Kuzmin , Boleslaw K. Szymanski

The generalized version of modularity for multilayer networks, a.k.a. multislice modularity, is characterized by two model parameters, namely resolution factor and inter-layer coupling factor. The former corresponds to a notion of…

Social and Information Networks · Computer Science 2019-07-15 Alessia Amelio , Giuseppe Mangioni , Andrea Tagarelli

We consider the problem of detecting communities or modules in networks, groups of vertices with a higher-than-average density of edges connecting them. Previous work indicates that a robust approach to this problem is the maximization of…

Data Analysis, Statistics and Probability · Physics 2007-05-23 M. E. J. Newman

This article provides a comprehensive exploration of submodular maximization problems, focusing on those subject to uniform and partition matroids. Crucial for a wide array of applications in fields ranging from computer science to systems…

Data Structures and Algorithms · Computer Science 2025-01-03 Solmaz S. Kia

Modularity is designed to measure the strength of division of a network into clusters (known also as communities). Networks with high modularity have dense connections between the vertices within clusters but sparse connections between…

Probability · Mathematics 2017-07-18 Liudmila Ostroumova Prokhorenkova , Pawel Pralat , Andrei Raigorodskii

The network density matrix formalism allows for describing the dynamics of information on top of complex structures and it has been successfully used to analyze from system's robustness to perturbations to coarse graining multilayer…

Physics and Society · Physics 2023-05-03 Arsham Ghavasieh , Manlio De Domenico

The network embedding problem aims to map nodes that are similar to each other to vectors in a Euclidean space that are close to each other. Like centrality analysis (ranking) and community detection, network embedding is in general…

Social and Information Networks · Computer Science 2019-04-26 Cheng-Shang Chang , Ching-Chu Huang , Chia-Tai Chang , Duan-Shin Lee , Ping-En Lu

The field of neuroscience is facing an unprecedented expanse in the volume and diversity of available data. Traditionally, network models have provided key insights into the structure and function of the brain. With the advent of big data…

Neurons and Cognition · Quantitative Biology 2018-02-14 Michael Vaiana , Sarah Muldoon

Modularity is a well-established concept for assessing community structures in various single and multi-layer networks, including those in biological and social domains. Brain networks are known to exhibit community structure at local,…

Neurons and Cognition · Quantitative Biology 2025-06-05 Avalon Campbell-Cousins , Federica Guazzo , Mark Bastin , Mario A. Parra , Javier Escudero

Multilayer networks offer a powerful framework for modeling complex systems across diverse domains, effectively capturing multiple types of connections and interdependent subsystems commonly found in real world scenarios. To analyze these…

Social and Information Networks · Computer Science 2026-02-20 Martin Guillemaud , Vera Dinkelacker , Mario Chavez

This paper introduces a conceptual, yet quantifiable, architecture framework by extending the notion of system modularity in its broadest sense. Acknowledging that modularity is not a binary feature and comes in various types and levels,…

Systems and Control · Computer Science 2016-08-05 Babak Heydari , Mohsen Mosleh , Kia Dalili

Networks are a widely-used tool to investigate the large-scale connectivity structure in complex systems and graphons have been proposed as an infinite size limit of dense networks. The detection of communities or other meso-scale…

Computation · Statistics 2021-01-05 Florian Klimm , Nick S. Jones , Michael T. Schaub

This work examines the presence of modularity in pre-trained Transformers, a feature commonly found in human brains and thought to be vital for general intelligence. In analogy to human brains, we consider two main characteristics of…

Computation and Language · Computer Science 2023-10-31 Zhengyan Zhang , Zhiyuan Zeng , Yankai Lin , Chaojun Xiao , Xiaozhi Wang , Xu Han , Zhiyuan Liu , Ruobing Xie , Maosong Sun , Jie Zhou

Hub structure, characterized by a few highly interconnected nodes surrounded by a larger number of nodes with fewer connections, is a prominent topological feature of biological brains, contributing to efficient information transfer and…

Machine Learning · Computer Science 2023-07-06 Zhaoze Wang , Junsong Wang

We describe techniques for the robust detection of community structure in some classes of time-dependent networks. Specifically, we consider the use of statistical null models for facilitating the principled identification of structural…

Data Analysis, Statistics and Probability · Physics 2013-04-16 Danielle S. Bassett , Mason A. Porter , Nicholas F. Wymbs , Scott T. Grafton , Jean M. Carlson , Peter J. Mucha

Many real-world networks, including nervous systems, exhibit meso-scale structure. This means that their elements can be grouped into meaningful sub-networks. In general, these sub-networks are unknown ahead of time and must be "discovered"…

Neurons and Cognition · Quantitative Biology 2020-11-16 Richard F. Betzel

Topology optimization (TO) is a family of computational methods that derive near-optimal geometries from formal problem descriptions. Despite their success, established TO methods are limited to generating single solutions, restricting the…

Machine Learning · Computer Science 2025-06-18 Andreas Radler , Eric Volkmann , Johannes Brandstetter , Arturs Berzins

The rapid diffusion of information and the adoption of social behaviors are of critical importance in situations as diverse as collective actions, pandemic prevention, or advertising and marketing. Although the dynamics of large cascades…

Physics and Society · Physics 2020-12-30 Hao Peng , Azadeh Nematzadeh , Daniel M. Romero , Emilio Ferrara
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