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This study applies Large Language Models (LLMs) to two foundational Electronic Health Record (EHR) data science tasks: structured data querying (using programmatic languages, Python/Pandas) and information extraction from unstructured…

Computation and Language · Computer Science 2026-01-29 Juan Jose Rubio Jan , Jack Wu , Julia Ive

We introduce a novel graph-based framework for alleviating key challenges in distantly-supervised relation extraction and demonstrate its effectiveness in the challenging and important domain of biomedical data. Specifically, we propose a…

Machine Learning · Computer Science 2024-04-08 Hao Zhang , Yang Liu , Xiaoyan Liu , Tianming Liang , Gaurav Sharma , Liang Xue , Maozu Guo

The best evidence concerning comparative treatment effectiveness comes from clinical trials, the results of which are reported in unstructured articles. Medical experts must manually extract information from articles to inform…

Computation and Language · Computer Science 2022-01-11 Benjamin E. Nye , Jay DeYoung , Eric Lehman , Ani Nenkova , Iain J. Marshall , Byron C. Wallace

Radiology reports are often lengthy and unstructured, posing challenges for referring physicians to quickly identify critical imaging findings while increasing the risk of missed information. This retrospective study aimed to enhance…

Computation and Language · Computer Science 2025-06-05 Iryna Hartsock , Cyrillo Araujo , Les Folio , Ghulam Rasool

BACKGROUND: Radiology reports are typically written in a free-text format, making clinical information difficult to extract and use. Recently the adoption of structured reporting (SR) has been recommended by various medical societies thanks…

Graph analytics is widely used in many fields to analyze various complex patterns. However, in most cases, important data in companies is stored in RDBMS's, and so, it is necessary to extract graphs from relational databases to perform…

Databases · Computer Science 2025-09-24 Jeongho Park , Geonho Lee , Min-Soo Kim

Reading and interpreting chest X-ray images is one of the most radiologist's routines. However, it still can be challenging, even for the most experienced ones. Therefore, we proposed a multi-model deep learning-based automated chest X-ray…

Image and Video Processing · Electrical Eng. & Systems 2024-01-31 Arief Purnama Muharram , Hollyana Puteri Haryono , Abassi Haji Juma , Ira Puspasari , Nugraha Priya Utama

Obtaining datasets labeled to facilitate model development is a challenge for most machine learning tasks. The difficulty is heightened for medical imaging, where data itself is limited in accessibility and labeling requires costly time and…

Computation and Language · Computer Science 2018-10-03 Nithya Attaluri , Ahmed Nasir , Carolynne Powe , Harold Racz , Ben Covington , Li Yao , Jordan Prosky , Eric Poblenz , Tobi Olatunji , Kevin Lyman

Chest X-rays are one of the most common radiological examinations in daily clinical routines. Reporting thorax diseases using chest X-rays is often an entry-level task for radiologist trainees. Yet, reading a chest X-ray image remains a…

Computer Vision and Pattern Recognition · Computer Science 2018-01-16 Xiaosong Wang , Yifan Peng , Le Lu , Zhiyong Lu , Ronald M. Summers

Developing generalist foundation model has recently attracted tremendous attention among researchers in the field of AI for Medicine (AI4Medicine). A pivotal insight in developing these models is their reliance on dataset scaling, which…

Computer Vision and Pattern Recognition · Computer Science 2024-04-26 Xiaoman Zhang , Chaoyi Wu , Ziheng Zhao , Jiayu Lei , Ya Zhang , Yanfeng Wang , Weidi Xie

This paper introduces a novel, entity-aware metric, termed as Radiological Report (Text) Evaluation (RaTEScore), to assess the quality of medical reports generated by AI models. RaTEScore emphasizes crucial medical entities such as…

Computation and Language · Computer Science 2024-10-24 Weike Zhao , Chaoyi Wu , Xiaoman Zhang , Ya Zhang , Yanfeng Wang , Weidi Xie

Building generalizable medical AI systems requires pretraining strategies that are data-efficient and domain-aware. Unlike internet-scale corpora, clinical datasets such as MIMIC-CXR offer limited image counts and scarce annotations, but…

Multiple entities in a document generally exhibit complex inter-sentence relations, and cannot be well handled by existing relation extraction (RE) methods that typically focus on extracting intra-sentence relations for single entity pairs.…

Computation and Language · Computer Science 2019-08-12 Yuan Yao , Deming Ye , Peng Li , Xu Han , Yankai Lin , Zhenghao Liu , Zhiyuan Liu , Lixin Huang , Jie Zhou , Maosong Sun

Text mining and information extraction for the medical domain has focused on scientific text generated by researchers. However, their direct access to individual patient experiences or patient-doctor interactions can be limited. Information…

Computation and Language · Computer Science 2022-04-22 Amelie Wührl , Roman Klinger

Recent progress in Large Vision-Language Models (LVLMs) has enabled promising applications in medical tasks, such as report generation and visual question answering. However, existing benchmarks focus mainly on the final diagnostic answer,…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Hyungyung Lee , Geon Choi , Jung-Oh Lee , Hangyul Yoon , Hyuk Gi Hong , Edward Choi

Medical imaging is critical to the diagnosis and treatment of numerous medical problems, including many forms of cancer. Medical imaging reports distill the findings and observations of radiologists, creating an unstructured textual…

Computation and Language · Computer Science 2021-08-23 Kevin Lybarger , Aashka Damani , Martin Gunn , Ozlem Uzuner , Meliha Yetisgen

Radiology reporting is a crucial part of the communication between radiologists and other medical professionals, but it can be time-consuming and error-prone. One approach to alleviate this is structured reporting, which saves time and…

Computer Vision and Pattern Recognition · Computer Science 2023-09-08 Chantal Pellegrini , Matthias Keicher , Ege Özsoy , Nassir Navab

Understanding how two radiology image sets differ is critical for generating clinical insights and for interpreting medical AI systems. We introduce RadDiff, a multimodal agentic system that performs radiologist-style comparative reasoning…

Computer Vision and Pattern Recognition · Computer Science 2026-01-08 Xiaoxian Shen , Yuhui Zhang , Sahithi Ankireddy , Xiaohan Wang , Maya Varma , Henry Guo , Curtis Langlotz , Serena Yeung-Levy

Over 1.4 billion chest X-rays (CXRs) are performed annually due to their cost-effectiveness as an initial diagnostic test. This scale of radiological studies provides a significant opportunity to streamline CXR interpretation and…

Radiology reports are an important means of communication between radiologists and other physicians. These reports express a radiologist's interpretation of a medical imaging examination and are critical in establishing a diagnosis and…

Computer Vision and Pattern Recognition · Computer Science 2017-09-14 Hojjat Salehinejad , Shahrokh Valaee , Aren Mnatzakanian , Tim Dowdell , Joseph Barfett , Errol Colak
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