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Large language models (LLMs) show promise for diagnostic reasoning but often lack reliable, knowledge grounded inference. Knowledge graphs (KGs), such as the Unified Medical Language System (UMLS), offer structured biomedical knowledge that…

Computation and Language · Computer Science 2025-09-24 Saksham Khatwani , He Cheng , Majid Afshar , Dmitriy Dligach , Yanjun Gao

Knowledge Graph Embeddings (KGEs) have shown promising performance on link prediction tasks by mapping the entities and relations from a knowledge graph into a geometric space (usually a vector space). Ultimately, the plausibility of the…

Machine Learning · Computer Science 2020-10-20 Mojtaba Nayyeri , Chengjin Xu , Jens Lehmann , Sahar Vahdati

Large language models like GPT-4, Gemini, and Claude have transformed natural language processing (NLP) tasks such as question answering, dialogue generation, summarization, and so forth; yet their susceptibility to hallucination stands as…

Computation and Language · Computer Science 2025-07-21 Nur A Zarin Nishat , Andrea Coletta , Luigi Bellomarini , Kossi Amouzouvi , Jens Lehmann , Sahar Vahdati

Large language models (LLMs) based on generative pre-trained Transformer have achieved remarkable performance on knowledge graph question-answering (KGQA) tasks. However, LLMs often produce ungrounded subgraph planning or reasoning results…

Computation and Language · Computer Science 2025-03-10 Mufan Xu , Kehai Chen , Xuefeng Bai , Muyun Yang , Tiejun Zhao , Min Zhang

Large ontologies still pose serious challenges to state-of-the-art ontology alignment systems. In this paper we present an approach that combines a neural embedding model and logic-based modules to accurately divide an input ontology…

Artificial Intelligence · Computer Science 2020-03-12 Ernesto Jiménez-Ruiz , Asan Agibetov , Jiaoyan Chen , Matthias Samwald , Valerie Cross

Large language models (LLMs) offer new opportunities for constructing knowledge graphs (KGs) from unstructured clinical narratives. However, existing approaches often rely on structured inputs and lack robust validation of factual accuracy…

Artificial Intelligence · Computer Science 2026-01-06 Udiptaman Das , Krishnasai B. Atmakuri , Duy Ho , Chi Lee , Yugyung Lee

Knowledge representation learning has been commonly adopted to incorporate knowledge graph (KG) into various online services. Although existing knowledge representation learning methods have achieved considerable performance improvement,…

Machine Learning · Computer Science 2022-05-18 Binbin Hu , Zhiyang Hu , Zhiqiang Zhang , Jun Zhou , Chuan Shi

Embedding knowledge graphs (KGs) for multi-hop logical reasoning is a challenging problem due to massive and complicated structures in many KGs. Recently, many promising works projected entities and queries into a geometric space to…

Machine Learning · Computer Science 2023-04-25 Dong Yang , Peijun Qing , Yang Li , Haonan Lu , Xiaodong Lin

Knowledge Graph (KG) is a graph based data structure to represent facts of the world where nodes represent real world entities or abstract concept and edges represent relation between the entities. Graph as representation for knowledge has…

Social and Information Networks · Computer Science 2024-04-16 Manita Pote

Knowledge Graph-based Retrieval-Augmented Generation (KG-RAG) is an increasingly explored approach for combining the reasoning capabilities of large language models with the structured evidence of knowledge graphs. However, current…

Artificial Intelligence · Computer Science 2026-01-13 Dongzhuoran Zhou , Yuqicheng Zhu , Xiaxia Wang , Hongkuan Zhou , Yuan He , Jiaoyan Chen , Steffen Staab , Evgeny Kharlamov

Large language models (LLMs) have shown remarkable capabilities in natural language processing. However, in knowledge graph question answering tasks (KGQA), there remains the issue of answering questions that require multi-hop reasoning.…

Computation and Language · Computer Science 2025-08-22 Runxuan Liu , Bei Luo , Jiaqi Li , Baoxin Wang , Ming Liu , Dayong Wu , Shijin Wang , Bing Qin

We present a method for finding hierarchy-aware embeddings of knowledge graphs (KGs) using graph neural networks (GNNs) enriched with a semantic loss derived from underlying ontologies. This method yields embeddings that better reflect…

Machine Learning · Computer Science 2026-05-21 Filip Kronström , Alexander H. Gower , Daniel Brunnsåker , Ievgeniia A. Tiukova , Ross D. King

Large Language Models (LLMs) are often criticized for lacking true "understanding" and the ability to "reason" with their knowledge, being seen merely as autocomplete systems. We believe that this assessment might be missing a nuanced…

Artificial Intelligence · Computer Science 2024-06-18 Venkat Venkatasubramanian

Autoregressive large language models (LLMs) pre-trained by next token prediction are inherently proficient in generative tasks. However, their performance on knowledge-driven tasks such as factual knowledge querying remains unsatisfactory.…

Computation and Language · Computer Science 2026-01-14 Peng Yu , Cheng Deng , Beiya Dai , Xinbing Wang , Ying Wen

Given an input dataset (i.e., a set of tuples), query definability in Ontology-based Data Management (OBDM) amounts to find a query over the ontology whose certain answers coincide with the tuples in the given dataset. We refer to such a…

Artificial Intelligence · Computer Science 2021-08-24 Gianluca Cima , Federico Croce , Maurizio Lenzerini

Learning embeddings of entities and relations existing in knowledge bases allows the discovery of hidden patterns in data. In this work, we examine the geometrical space's contribution to the task of knowledge base completion. We focus on…

Computation and Language · Computer Science 2019-08-20 Prodromos Kolyvakis , Alexandros Kalousis , Dimitris Kiritsis

Ontology-based knowledge graphs (KG) are desirable for effective knowledge management and reuse in various decision making scenarios, including design. Creating and populating extensive KG based on specific ontological models can be highly…

Knowledge Graphs (KGs) are composed of structured information about a particular domain in the form of entities and relations. In addition to the structured information KGs help in facilitating interconnectivity and interoperability between…

Artificial Intelligence · Computer Science 2020-05-15 Genet Asefa Gesese , Russa Biswas , Mehwish Alam , Harald Sack

Knowledge graphs (KGs) are a popular way to organise information based on ontologies or schemas and have been used across a variety of scenarios from search to recommendation. Despite advances in KGs, representing knowledge remains a…

Artificial Intelligence · Computer Science 2023-10-10 Christos Theodoropoulos , Natasha Mulligan , Thaddeus Stappenbeck , Joao Bettencourt-Silva

Pre-trained language representation models (PLMs) cannot well capture factual knowledge from text. In contrast, knowledge embedding (KE) methods can effectively represent the relational facts in knowledge graphs (KGs) with informative…

Computation and Language · Computer Science 2020-11-24 Xiaozhi Wang , Tianyu Gao , Zhaocheng Zhu , Zhengyan Zhang , Zhiyuan Liu , Juanzi Li , Jian Tang