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Genetic Regulatory Networks (GRNs) plays a vital role in the understanding of complex biological processes. Modeling GRNs is significantly important in order to reveal fundamental cellular processes, examine gene functions and understanding…

Computational Engineering, Finance, and Science · Computer Science 2012-05-10 Khalid Raza , Rafat Parveen

As a new approach to train generative models, \emph{generative adversarial networks} (GANs) have achieved considerable success in image generation. This framework has also recently been applied to data with graph structures. We propose…

Machine Learning · Computer Science 2021-02-26 Shuangfei Fan , Bert Huang

A variety of real-world tasks involve the classification of images into pre-determined categories. Designing image classification algorithms that exhibit robustness to acquisition noise and image distortions, particularly when the available…

Machine Learning · Statistics 2016-03-10 Umamahesh Srinivas

Building explainable systems is a critical problem in the field of Natural Language Processing (NLP), since most machine learning models provide no explanations for the predictions. Existing approaches for explainable machine learning…

Computation and Language · Computer Science 2019-06-12 Hui Liu , Qingyu Yin , William Yang Wang

We propose a novel approach to logic-based learning which generates assumption-based argumentation (ABA) frameworks from positive and negative examples, using a given background knowledge. These ABA frameworks can be mapped onto logic…

Artificial Intelligence · Computer Science 2023-05-26 Maurizio Proietti , Francesca Toni

Arguments are a fundamental aspect of human reasoning, in which claims are supported, challenged, and weighed against one another. We present an end-to-end large language model (LLM)-based system for reconstructing arguments from natural…

Computation and Language · Computer Science 2026-05-20 Paulo Pirozelli , Victor Hugo Nascimento Rocha , Fabio G. Cozman , Douglas Aldred

We propose a novel approach for learning the evolution that employs differentiable neural networks to approximate the full GENERIC structure. Instead of manually choosing the fitted parameters, we learn the whole model together with the…

Computational Physics · Physics 2021-09-28 Martin Šípka , Michal Pavelka

While deep learning has achieved great success in many fields, one common criticism about deep learning is its lack of interpretability. In most cases, the hidden units in a deep neural network do not have a clear semantic meaning or…

Genomics · Quantitative Biology 2019-06-04 Tianle Ma , Aidong Zhang

Deep learning-based AI models have been extensively applied in genomics, achieving remarkable success across diverse applications. As these models gain prominence, there exists an urgent need for interpretability methods to establish…

Genomics · Quantitative Biology 2025-05-16 Chenyu Wang , Chaoying Zuo , Zihan Su , Yuhang Xing , Lu Li , Maojun Wang , Zeyu Zhang

In this paper we investigate a neural network model in which weights between computational nodes are modified according to a local learning rule. To determine whether local learning rules are sufficient for learning, we encode the network…

Neural and Evolutionary Computing · Computer Science 2025-12-08 Jonathan Baxter

Many semantics for weighted argumentation frameworks assume that each argument is associated with an initial weight. However, eliciting these initial weights poses challenges: (1) accurately providing a specific numerical value is often…

Artificial Intelligence · Computer Science 2025-02-12 Nir Oren , Bruno Yun

Protein structure prediction can be shown to be an NP-hard problem; the number of conformations grows exponentially with the number of residues. The native conformations of proteins occupy a very small subset of these, hence an exploratory,…

Chemical Physics · Physics 2008-02-03 Mehul M. Khimasia , Peter V. Coveney

Extracting information from tables in documents presents a significant challenge in many industries and in academic research. Existing methods which take a bottom-up approach of integrating lines into cells and rows or columns neglect the…

Neural and Evolutionary Computing · Computer Science 2019-04-04 Nataliya Le Vine , Matthew Zeigenfuse , Mark Rowan

The problem of automatic software generation is known as Machine Programming. In this work, we propose a framework based on genetic algorithms to solve this problem. Although genetic algorithms have been used successfully for many problems,…

Neural and Evolutionary Computing · Computer Science 2023-04-04 Shantanu Mandal , Todd A. Anderson , Javier S. Turek , Justin Gottschlich , Shengtian Zhou , Abdullah Muzahid

Explainable artificial intelligence (XAI) is an important area in the AI community, and interpretability is crucial for building robust and trustworthy AI models. While previous work has explored model-level and instance-level explainable…

Machine Learning · Computer Science 2025-12-05 Xudong Wang , Ziheng Sun , Chris Ding , Jicong Fan

Generative large language models as tools in the legal domain have the potential to improve the justice system. However, the reasoning behavior of current generative models is brittle and poorly understood, hence cannot be responsibly…

Artificial Intelligence · Computer Science 2025-05-06 Cor Steging , Silja Renooij , Bart Verheij

Gradual semantics (GS) have demonstrated great potential in argumentation, in particular for deploying quantitative bipolar argumentation frameworks (QBAFs) in a number of real-world settings, from judgmental forecasting to explainable AI.…

Artificial Intelligence · Computer Science 2025-08-12 Antonio Rago , Stylianos Loukas Vasileiou , Francesca Toni , Tran Cao Son , William Yeoh

Classical models for supervised machine learning, such as decision trees, are efficient and interpretable predictors, but their quality is highly dependent on the particular choice of input features. Although neural networks can learn…

Machine Learning · Computer Science 2025-10-17 Gabriel Poesia , Georgia Gabriela Sampaio

We study the problem of learning differentiable functions expressed as programs in a domain-specific language. Such programmatic models can offer benefits such as composability and interpretability; however, learning them requires…

Machine Learning · Computer Science 2021-03-30 Ameesh Shah , Eric Zhan , Jennifer J. Sun , Abhinav Verma , Yisong Yue , Swarat Chaudhuri

We propose a novel architecture for Graph Neural Networks that is inspired by the idea behind Tree Kernels of measuring similarity between trees by taking into account their common substructures, named fragments. By imposing a series of…

Computation and Language · Computer Science 2021-10-04 Federico Ruggeri , Marco Lippi , Paolo Torroni
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